Package org.ensembl.variation.datamodel

Data types that are unique to ensembl variation databases such as Variation, Allele and Genotype.

See:
Description

Interface Summary

Allele	A single allele of a nucleotide variation.
AlleleConsequenceAdaptor	Adaptor for retrievning and computing AlleleConsequences.
AlleleFeature	An allele located on a genome.
AlleleGroup	Ensembl representation of a grouping of alleles (aka haplotype).
Genotype	Genotype.
Individual	This is a class representing a single individual.
IndividualGenotype	The genotype of a single diploid individual at a specific locus.
LDFeature	A linkage disequilibrium between two VariationFeatures.
Population	A group of individuals.
PopulationGenotype	A genotype that is present in a population.
TranscriptVariation	A TranscriptVariation object represents a variation feature which is in close proximity to an Ensembl transcript.
Variation	A nucleotide variation such as a SNP.
VariationFeature	This is a an occurrence of a nucleotide variation in the genome.
VariationGroup	Grouping of variations (aka haplotype set).
VariationGroupFeature	The point of this class is....

Class Summary

AlleleConsequence	Represents part or all of the effect of a single allele on a transcript.
ConsequenceType	TranscriptVariation consequence types.
LDFeatureContainer	A container for LDFeatures (linkage disequilibrium features) that provides various methods for filtering and accessing the the contained data.
ValidationState	Possible Validation states of a Variation.

Package org.ensembl.variation.datamodel Description

Data types that are unique to ensembl variation databases such as Variation, Allele and Genotype.