Public Sigenae Contig Browser Pig DddView

                
Based on Ensembl release 40 - Aug 2006
 

Pig Digital Differentiel Display

DDD is a tool for comparing EST profiles in order to identify contigs with significantly different expression levels

Define two library pools by selecting one or more libraries in each «Lib. Pool» column and click on Continue button

Discard singlets

Uncheck below checkboxes to include singlets in analysis of lib. Pool 1, lib. Pool 2 or both.
Organ / Tissue / Cell type Lib. name Dev. stage / Exp. condition Nb ESTs Lib. Pool 1 Lib. Pool 2
Adipose CSEQFXL35 adipose Unknown 151
  Normalized porcine adipose tissues cDNA library Adult 742
  Porcine adipose tissue cDNA library (PADT) Adult 13448
  Fat Unknown 8752
Adipose (abdominal fat) SUSFLECK Abdominal Fat Normalized 5 weeks to 25 weeks 5120
  SUSFLECK Abdominal Fat 5 weeks to 25 weeks 5094
Adipose (back fat) Pig back fat Unknown 2283
  SusFleck Backfat 5 weeks to 25 weeks 13991
  SusFleck Backfat Normalized 5 weeks to 25 weeks 2119
  Full-length enriched swine cDNA library, adult back fat Adult 9063
Adipose (neck fat) Sus Scrofa Adipocyte Zap Express Library After differentiation Piglet (about two weeks old) 1963
  Sus Scrofa Adipocyte Zap Express Library Before differentiation Piglet (about two weeks old) 1891
Adipose (preadipocyte and differentiated adipocyte) SUSFLECK Fat Cell Normalized Pooling of cells 0 day, 5 days and 10 days after induction of differentiation into adipocyte 5220
  SUSFLECK Fat Cell Pooling of cells 0 day, 5 days and 10 days after induction of differentiation into adipocyte 5121
Adipose (subcutaneous) Porcine adipogenesis cDNA library Unknown 198
  Primary preadipocyte induced differentiation SSH-1 Library 2-day-old 158
Adrenal gland CSEQFXL37 pig adrenal Unknown 159
  Full-length enriched swine cDNA library, adult adrenal gland Adult 9070
  Cag Unknown 8823
Amnion Amn Unknown 3814
Aorta Aor Unknown 6576
Bladder Bla Unknown 9362
Blood Cbl Unknown 11327
Blood (peripheral blood cell) Porcine Peripheral Blood Cell cDNA library Control, 5 month old castrated male 2407
  Infected Porcine Peripheral Blood Cell cDNA library 28 days post infection, 5 month old castrated male 2425
  Porcine Peripheral Blood Cell cDNA library, Cot 05 Control, 5 month old castrated male 214
  Porcine Peripheral Blood Cell cDNA library, Cot 30 Control, 5 month old castrated male 560
Blood (peripheral blood leukocyte) Sus scrofa subtractive cDNA library from PBL 24 hours after APP challenge (WBC-F) Adult 387
Blood (peripheral blood lymphocyte) Full-length enriched swine cDNA library, adult peripheral blood lymphocyte Adult 1683
Blood (periphral blood mononuclear cell) Full-length enriched swine cDNA library, adult periphral blood mononuclear cell Adult 8210
Bone marrow Porcine Bone Marrow cDNA library Control, 5 month old castrated male 314
  Infected Porcine Bone Marrow cDNA library 28 days post infection, 5 month old castrated male 371
Bone marrow (pelvis) Nbm Newborn 115 days 12197
Brain CSEQFXL36 fetal brain Fetal 165
  Cbr Unknown 10610
Brain (cerebellum) Cbe Unknown 6231
  Ece Foetus 50 days 5705
  Fce Foetus 100 days 5496
Brain (cerebral cortex) Ecc Foetus 50 days 10406
  Fcc 107 days early born 6978
Brain (frontal cortex) Fco Unknown 8161
Brain (frontal lobe) Full-length enriched swine cDNA library, adult brain (frontal lobe) Adult 8020
Brain (neocortex) Full-length enriched cDNA from Korean native pig neocortex 5 days old 276
Brain and central nervous system Porcine Brain Library Fetal, 10-day, 21-day, 5-week, mature boar, post-pubertal gilt, lactating sow 965
Brain stem Ebs Foetus 50 days 10002
  Fbs 107 days early born 9058
  Full-length enriched cDNA from Korean native pig brainstem 5 days old 905
Cartilage Nca Newborn 115 days 10441
Colon Lin Unknown 9649
  Nco Newborn 115 days 8400
  Full-length enriched swine cDNA library, adult colon Adult 7287
Colon (colon ascendens) Col Unknown 7248
Dendritic cell (immature) Full-length enriched swine cDNA library, adult immature dendritic cell Adult 9464
Embryo MI-P-E7 Preelongation day 12 conceptus 1006
  KN277 Early embryos, from 8-cell stage to blastocysts 8981
  Pd12con Day 12 conceptus 1206
  Pd14con Day 14 conceptus 277
  Pd20fet Day 20 fetus 1388
  Pd45fet Day 45 fetus 541
  Pcrybst Day 6 pig blastocyst after cryopreservation 1383
  MARC PBE Day 12 whole embryos 1182
  MI-P-E3 Fetus at gestational day 45 892
  MI-P-E4 Embryo at gestational day 14 1156
  MI-P-E6 Fetus at gestational day 20 1007
Embryo/oocyte P4civp Slaughterhouse-derived oocytes, 4-cell embryos (days 3) and blastocyst stage (days 6) 1264
  P4civv Slaughterhouse-derived oocytes, 4-cell embryos (days 3) and blastocyst stage (days 6) 1716
  Pblivp Slaughterhouse-derived oocytes, 4-cell embryos (days 3) and blastocyst stage (days 6) 2045
  Pblivv Slaughterhouse-derived oocytes, 4-cell embryos (days 3) and blastocyst stage (days 6) 1373
  Pgvo Slaughterhouse-derived oocytes, 4-cell embryos (days 3) and blastocyst stage (days 6) 1668
Endometrium Pd10en Endometrium from a gilt on day 10 of the estrous cycle 1795
  Pd12_14end Endometrium from pregnant gilts on days 12 & 14 after estrus 792
  Pd3end Endometrium from a gilt on day 3 of the estrous cycle 1952
  Pd6end Endometrium from a gilt on day 6 of the estrous cycle 1672
Epidermis Eep Foetus 50 days 8995
  Nep Newborn 115 days 6413
Eye Eye Foetus 50 days 8414
Gullet Gul Unknown 7603
Heart Che Unknown 8310
  Hea Unknown 7265
  454 sequencing of Sus scrofa heart transcript fragment library Four to six months 176149
  454 sequencing of Sus scrofa heart transcript fragment library Four to six months 96515
  454 sequencing of Sus scrofa heart transcript fragment library Four to six months 288357
Heart (left ventricle) Hlv Unknown 10717
Hippocampus Fhi 107 days early born 8557
Hypothalamus Hyp Unknown 9839
  Full-length enriched swine cDNA library, adult hypothalamus Adult 6956
  MI-P-H1 Hypothalamus at estrus day 0 591
  MI-P-H2 Hypothalamus at estrus day 5 110
  MI-P-H3 Hypothalamus at estrus day 12 684
  MI-P-H5 Hypothalamus at estrus day 0 104
Hypothalamus/ovary MI-P-HO Hypothalamus at estrus days 0 and 12 and ovary at estrus days 0, 5 and 12 848
Intestine Full-length enriched swine cDNA library, adult intestine Adult 9420
Intestine (duodenum) Duo Unknown 7980
Intestine (ileum) Ill Unknown 7526
Intestine (jejunum) Cje Unknown 7447
  Eje Foetus 50 days 12262
  Jej Unknown 12385
  Nje Newborn 115 days 7855
Intestine (small) LambdaZapII, pig adult small intestine Adult 186
  Sin Unknown 7397
  Porcine small intestine cDNA library Unknown 1326
Joint capsule Jca Unknown 10151
Kidney CSEQFXL12 pig kidney Unknown 176
  Cki Unknown 7392
  Kid Unknown 9716
  Full-length enriched swine cDNA library, adult kidney Adult 7092
Kidney (epithelial) Porcine kidney epithelial cell line [PK13; CRL6489] - PRRSV-exposed Unknown 209
Liver CSEQFXL11 pig liver Unknown 173
  Full-length enriched swine cDNA library, adult liver Adult 28674
  Banna Minipig Inbred line liver tissue cDNA library Adult 193
  Sus scrofa subtractive cDNA library from liver tissue (LIVa) Adult 104
  Cli Unknown 8187
  Eli Foetus 50 days 8242
  Fli Foetus 100 days 6600
  Liv Unknown 8631
  SUSFLECK Liver Normalized 5 weeks to 25 weeks 4688
  SUSFLECK Liver 5 weeks to 25 weeks 7115
  Differential display RT-PCR clones Unknown 201
Lung Full-length enriched swine cDNA library, adult lung Adult 9054
  KN404_2 Unknown 9120
  Clu Unknown 10727
  Elu Foetus 50 days 2982
  Lun Unknown 8420
  Nlu Newborn 115 days 7227
Lung (macrophage) Forward - stimulated minus unstimulated macrophage Unknown 425
  Reverse - unstimulated minus stimulated macrophage Unknown 398
  Alveolar macrophage from PRRSV-infected pig Unknown 1298
Lung (marc-145 cell line) MARC-145 cell line - PRRSV-exposed PRRSV-infected MARC-145 cells at 72 hours post infection 170
Lymph node Sus scrofa subtractive cDNA library from lymph node tissue (LN) Adult 131
  Cly Unknown 10570
  Lnt Lymphatic nodule tracheobroncalis 8757
  Lyg Unknown 9554
  Porcine Lymph node cDNA library Control, 5 month old castrated male 1297
  Infected Porcine Lymph node cDNA library 28 days post infection, 5 month old castrated male 223
  Porcine Lymph node cDNA library, Cot 5 Control, 5 month old castrated male 1853
  Porcine Lymph node cDNA library, Cot 30 Control, 5 month old castrated male 126
Lymph node (mesenteric) Full-length enriched swine cDNA library, adult mesenteric lymph node Adult 9169
Lymph node (oropharyngeal tonsils and mandibular) Oropharyngeal tonsils and mandibular lymph nodes of diseased and healthy European wild boar Unknown 320
Macrophage Sn African swine fever virus infected swine macrophages 5263
  Jns Macrophages were derived from peripheral blood mononuclear cells cultured for 48 hrs on plastic in the presence of 30% L929 supernatant 9294
  KN404_1 Mixed alveolar macrophage, uninfected, infected in vitro with PRRSv isolate H2 and infected in vitro with PRRSv isolate Gozzio 9263
Macrophage (alveolar) Full-length enriched swine cDNA library, adult alveolar macrophage Adult 8113
Mammary (galactophore) Cga Unknown 5692
Mammary gland Mcp Collostrum producing 7499
  Mga 7 days after weaning 7971
  Mgm 14 days after birth 6561
  Mgp 7 days pre birth 5795
Mediastinum Med Unknown 10148
Mucosal membrane Nmm Newborn 115 days 9094
  Ton Unknown 8609
Muscle DIAS_PMUS Unknown 1620
Muscle (biceps femoris) Sus scrofa skeletal muscle, biceps femoris adult Adult 360
  Bfe Unknown 11037
  Pig skeletal muscle, phagemid vector pT7T3 Adult 421
Muscle (infraspinatus) Isp Unknown 9106
Muscle (longissimus dorsi) Swine Lambda TriplEx2 Library At the age of 150 days (about 70Kg bodyweight) 169
  Sus LongSAGE/GLGI Express Library Embryonic day 65 post-fertilization 112
  Ldo Unknown 12494
  SUSFLECK Loin Muscle Normalized 5 weeks to 25 weeks 5414
  SUSFLECK Loin Muscle 5 weeks to 25 weeks 5770
  Wujin pig muscle full-length cDNA library Unknown 124
  Full-length enriched swine cDNA library, adult longissimus Adult 7930
  Swine Xiang Longissimus Dorsi Muscle cDNA Library Unknown 135
  454 sequencing of Sus scrofa longissimus dorsi (LDO) #1 transcript fragment library Four to six months 261537
  454 sequencing of Sus scrofa longissimus dorsi (LDO) #1 transcript fragment library Four to six months 158762
  454 sequencing of Sus scrofa longissimus dorsi (LDO) #1 transcript fragment library Four to six months 290194
Muscle (macrophage) Muscle - muscle minus alveolar macrophage Unknown 410
Muscle (masseter) Mas Unknown 8136
Muscle (semimembranosus) Sme Unknown 4332
Muscle (semitendinosus) Ese Foetus 50 days 9132
  Nms Newborn 115 days 7137
  Ste Unknown 9316
  Sus scrofa semitendinosus muscle cDNA subtracted library Unknown 189
Muscle (skeletal) Porcine skeletal muscle cDNA library (PoSM) 45 d and 90 d of gestation, birth, 7 wk and 1 yr of age 9881
  CSEQFXL34 pig skeletal muscle-rib eye Unknown 159
  UFV_EMBRAPA_Brazilian_PIG MUSCLE cDNA_Library Adult 3916
Muscle (supraspinatus) Ssp Unknown 8840
Muscle (tendeloin) Ctl Unknown 9322
Muscle (triceps brachii) Tbr Unknown 9796
Muscle (vastus intermedius) Vin Unknown 3844
Olfactory bulb Full-length enriched pig cDNA library, main and accessory olfactory bulb 5 weeks 853
Ovary CSEQFXL24 pig ovary Unknown 134
  Full-length enriched swine cDNA library, adult ovary Adult 38990
  CSEQRAN19 Unknown 4421
  Pfeto Fetal ovary 1400
  Pnatal Perinatal ovary 1760
  Pputal Peripubertal ovary 1605
  Cov Unknown 9925
  Ova Unknown 8896
  S.scrofa ovary Immature 208
  MI-P-O1 Ovary at estrus day 0 543
  MI-P-O2 Ovary at estrus day 5 357
  MI-P-O3 Ovary at estrus day 12 534
Ovary (corpus luteum) Pd12cl Day 12 Corpus Luteum 1297
Ovary (follicle) P2mm 2mm ovarian follicle 1772
  P4mm 4mm ovarian follicle 1670
  P6mm 6mm ovarian follicle 1975
  P8mm 8mm ovarian follicle 2164
  Pd0fol Day 0 ovarian follicle (gilt in standing estrus) 851
  Pd12fol Day 12 ovarian follicle 977
  Sus scrofa cDNA library (scaj) Granulosa from little-medium-large follicle 1395
  Pig ovarian follicle cDNA Follicular phase 107
  UNL-P-FN Ovarian follicles, ranging between 2.0 to 10.0 mm in diameter, collected during 7 days of the follicular phase of the pig estrous cycle 5449
Ovary (follicle/corpus luteum) Pd5ov Day 5 ovary (follicle and corpus luteum) 157
Ovary (oocyte) PmpIIg Gilt oocytes were matured for 42-44 hours to metaphase II (MII) arrest 820
  PmpIIs Sow oocytes were matured for 42-44 hours to metaphase II (MII) arrest 819
  Pueo Oocytes matured for 42-44 hours to metaphase II 174
  Puuo Oocytes matured for 42-44 hours to metaphase II 252
Oviduct Pd3ov Oviduct from a gilt on day 3 of the estrous cycle 1824
  Peov Oviduct from a gilt in estrus 1810
Pancreas Pan Unknown 5747
Peyer's patch UMNMPM3 Unknown 3633
Pituitary CSEQFXL39 pig pituitary Unknown 174
  Pgl Unknown 9645
  SUSFLECK Pituitary Gland Normalized 5 weeks to 25 weeks 5848
  SUSFLECK Pituitary Gland 5 weeks to 25 weeks 6268
  Full-length enriched swine cDNA library, adult pituitary gland Adult 8624
Pituitary (anterior) Pig anterior pituitary cDNA Follicular phase 125
  MI-P-A1 Anterior pituitary at estrus day 0 313
  MI-P-A2 Anterior pituitary at estrus day 5 1056
  MI-P-A3 Anterior pituitary at estrus day 12 445
  MI-P-NA Anterior pituitary tissue at estrus days 0, 5, and 12 1568
Placenta CSEQRAN09 Unknown 9068
  Pla Unknown 9316
  Full-length enriched swine cDNA library, adult placenta Adult 2450
  MI-P-AY0 Adult 1327
  MI-P-AY1 Adult 3733
Pooled MPL Pooled 2734
  MARC 3PIG Unknown 51910
  MARC 4PIG Unknown 77318
  Sus Scrofa library (scag) From embryos to adults 1655
  Sus Scrofa library (scac) Unknown 9522
  Sus Scrofa library (scan) From embryos to adults 12533
  Sus scrofa mixed tissue cDNA library Control, 5 month old castrated male 278
  MARC 1PIG Unknown 32676
  MARC 2PIG Unknown 35322
Prostate Pro Unknown 2435
  Full-length enriched swine cDNA library, adult prostate Adult 7660
Rectum Rec Unknown 7208
Regio umbilicalis Eru Foetus 50 days 9590
Retina Ret Unknown 9648
Rhinal mucous membrane Cmu Unknown 6654
Salivary gland Sag Unknown 8068
Skin Pig Skin Subtraction Library- Sulfur Mustard Regulated Transcripts Adult 152
  Full-length enriched swine cDNA library, adult skin Adult 6101
  Csk Unknown 8911
  Ski Unknown 8801
Spinal cord Spc Unknown 10147
Spleen Full-length enriched swine cDNA library, adult spleen Adult 9825
  CSEQRAN17 Unknown 8306
  Spleen from PRRSV-infected pig Unknown 886
  Csp Unknown 9538
  Spl Unknown 8237
  Full-length enriched cDNA from Korean native pig spleen 5 days old 301
  Porcine Spleen cDNA library Control, 5 month old castrated male 361
  Infected Porcine Spleen cDNA library 28 days post infection, 5 month old castrated male 1067
Stomach Cst Unknown 8661
  Sto Unknown 8141
Submaxillary gland Full-length enriched swine cDNA library, adult submaxillary gland Adult 8675
Suprarenal gland Sug Unknown 9260
Testis Porcine testis phage library Unknown 168
  Porcine testis cDNA library I Adult, l year of age 14458
  Full-length enriched swine cDNA library, adult testis Adult 7636
  Porcine testis cDNA library II Adult, l year of age, heat stressed 9646
  Sus Scrofa Testis Zap Express Library Piglet (about two weeks old 1818
  Porcine Testis from PRRSV-infected pig Unknown 1002
  Cte Unknown 5064
  Tes Unknown 5700
Thymus CSEQFXL40 pig thymus Unknown 145
  Full-length enriched swine cDNA library, adult thymus Adult 12254
  Fty Foetus 100 days 7648
  Pty Piglet 2 days 9613
  Porcine Thymus cDNA library Control, 5 month old castrated male 312
  Infected Porcine Thymus cDNA library 28 days post infection, 5 month old castrated male 1442
Thyroid Cty Unknown 12029
  Thg Unknown 9337
Thyroid and parathyroid gland CSEQFXL38 pig thyroid and parathyroid Unknown 170
Trachea Full-length enriched swine cDNA library, adult trachea Adult 8395
  Tra Unknown 9774
Unknown Sus scrofa Expressed Library Unknown 2273
Uterus Full-length enriched swine cDNA library, adult uterus Adult 10000
  CSEQRAN04 Unknown 8512
  Cut Unknown 7330
  Ute Unknown 9225
  MI-P-CP0 Unknown 1799
  MI-P-CP1 Unknown 3248
 

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