Browse the Sus scrofa contigs database
About the Sus scrofa contigs database
Assembly
The Pig EST contig browser is an
INRA project
aimed to produce
and maintain an automatic annotation of Pig EST libraries.
Currently, this is a preliminary portal for the annotation of Pig Agena ESTs
. Please refer to the
Agenae Project's Webpage for more details on the Pig Agena ESTs
Project.
Annotation
Contigs were annotated searching sequence homologies against following databases:
- UniProt / SwissProt
- UniProt / TrEMBL
- Prodom 31-Oct-2005
- Sigenae Pig Contigs V3
- TIGR Pig SsGI 12
- UniGene Pig
- UniGene Human
- Ensembl Human Transcripts NCBI36
Statistics
| Assembly: | psc3, January 2006 |
| Number of base pairs: | 67,561,553 |
| Number of sequences: | 437,656 |
| Total number of contigs: | 95,439 |
| Number of singlets: | 54,653 |
| Polymorphism: | January 2006 |
| Number of putative SNPs: | 3,024 |
| Number of contigs including SNP: | 1,432 |
Example Data Points
Jump directly to the example entry points:
Based on Ensembl release 40 - Aug 2006
