Browse the Sparus aurata contigs database
About the Sparus aurata contigs database
Assembly
The Seabream EST contig browser is an
AquaFirst project
aimed to produce and maintain an automatic annotation of Seabream EST libraries.
Currently, this is a preliminary portal for the annotation of Seabream AquaFirst ESTs.
Please refer to the
AquaFirst Project's Webpage for more details on the AquaFirst Project.
Annotation
Contigs were annotated searching sequence homologies against following databases:
- UniProtKB/Swiss-Prot Release 2010_05 of 20-Apr-2010
- RefSeq Protein Index Blast of 20-Apr-2010
- Pfam Release 24.0 of Jul-2009
- Sigenae Seabream Contigs V5
- RefSeq RNA Index Blast of 20-Apr-2010
- TIGR Fugu FGI 3.0
- TIGR Medaka OlGI 8.0
- TIGR Salmon AsGI 5.0
- TIGR Trout RtGI 7.0
- TIGR ZebraFish ZGI 17.0
- UniGene FatheadMinnow Build #10
- UniGene Fugu Build #7
- UniGene Human Build #223
- UniGene KilliFish Build #8
- UniGene Medaka Build #27
- UniGene Salmon Build #25
- UniGene Trout Build #30
- UniGene ZebraFish Build #117
- Ensembl Fugu Transcripts FUGU4 57
- Ensembl Human Transcripts GRCh37 57
- Ensembl Medaka Transcripts MEDAKA1 57
- Ensembl Tetraodon Transcripts TETRAODON8 57
- Ensembl ZebraFish Transcripts Zv8 57
Statistics
| Assembly: | psb5, May 2010 |
| Number of base pairs (Contigs): | 21,793,399 |
| Number of sequences (EST/mRNA): | 67,872 |
| Total number of contigs: | 29,077 |
| Number of singlets: | 18,887 |
| Polymorphism: | May 2010 |
| Number of putative SNPs: | 990 |
| Number of contigs including SNP: | 469 |
Example Data Points
Jump directly to the example entry points:
Based on Ensembl release 40 - Aug 2006
