Public Sigenae Contig Browser Seabream

About the Sparus aurata contigs database

Assembly

The Seabream EST contig browser is an AquaFirst project aimed to produce and maintain an automatic annotation of Seabream EST libraries.

Currently, this is a preliminary portal for the annotation of Seabream AquaFirst ESTs. Please refer to the AquaFirst Project's Webpage for more details on the AquaFirst Project.

Annotation

Contigs were annotated searching sequence homologies against following databases:

• UniProtKB/Swiss-Prot Release 2010_05 of 20-Apr-2010
• RefSeq Protein Index Blast of 20-Apr-2010
• Pfam Release 24.0 of Jul-2009
• Sigenae Seabream Contigs V5
• RefSeq RNA Index Blast of 20-Apr-2010
• TIGR Fugu FGI 3.0
• TIGR Medaka OlGI 8.0
• TIGR Salmon AsGI 5.0
• TIGR Trout RtGI 7.0
• TIGR ZebraFish ZGI 17.0
• UniGene FatheadMinnow Build #10
• UniGene Fugu Build #7
• UniGene Human Build #223
• UniGene KilliFish Build #8
• UniGene Medaka Build #27
• UniGene Salmon Build #25
• UniGene Trout Build #30
• UniGene ZebraFish Build #117
• Ensembl Fugu Transcripts FUGU4 57
• Ensembl Human Transcripts GRCh37 57
• Ensembl Medaka Transcripts MEDAKA1 57
• Ensembl Tetraodon Transcripts TETRAODON8 57
• Ensembl ZebraFish Transcripts Zv8 57

Statistics

Assembly:	psb5, May 2010
Number of base pairs:	21,793,399
Number of sequences:	67,872
Total number of contigs:	29,077
Number of singlets:	18,887

Polymorphism:	May 2010
Number of putative SNPs:	990
Number of contigs including SNP:	469

Example Data Points

Jump directly to the example entry points:

Contig:	AM951368.p.sb.5
SNP:	snp_AM951345_473