Public Sigenae Contig Browser Seabream DddView

                
Based on Ensembl release 40 - Aug 2006
 

Seabream Digital Differentiel Display

DDD is a tool for comparing EST profiles in order to identify contigs with significantly different expression levels

Define two library pools by selecting one or more libraries in each «Lib. Pool» column and click on Continue button

Discard singlets

Uncheck below checkboxes to include singlets in analysis of lib. Pool 1, lib. Pool 2 or both.
Organ / Tissue / Cell type Lib. name Dev. stage / Exp. condition Nb ESTs Lib. Pool 1 Lib. Pool 2
Adipose CDN07 Adult 2133
Brain Nodavirus infected sea bream SSH library Unknown 248
  Confinement brain early (fw+rv) (gsub02) Unknown 595
  Confinement brain early (fw+rv) (gsub01) Unknown 370
Brain and pituitary CDN05 Adult 2114
Cartilage and bone CDN04 Adult 2167
Corpuscles of stannius CDN17 Adult 5522
Gill CDN10 Adult 2109
  Confinement gill early(fw+rv) (gsug02) Unknown 698
  Confinement gill early(fw+rv) (gsug01) Unknown 541
Gonads Sea bream estradiol-treated testis subtractive library 400 g fish, September 187
Heart and vessels CDN06 Adult 2221
Intervetebral cartilage Sparus aurata EST, intervetebral tissue Juvenile 144
Intestine CDN11 Adult 2120
  Aquafirst Sea Bream SSH selection pathogen intestine (gsgi08) Unknown 655
  Aquafirst Sea Bream SSH selection pathogen intestine (gsgi07) Unknown 701
Kidney Sparus aurata EST, kidney Juvenile 380
Kidney (head) Seabream Head Kidney Library Unknown 2132
  CDN08 Adult 2170
  Aquafirst Sea Bream SSH selection pathogen head kidney (gsgy08) Unknown 697
  Aquafirst Sea Bream SSH selection confinement head kidney late (gsgy03) Unknown 320
  Aquafirst Sea Bream SSH selection confinement head kidney late (gsgy04) Unknown 314
  Aquafirst Sea Bream SSH selection confinement head kidney early (gsgy02) Unknown 694
  Aquafirst Sea Bream SSH selection confinement head kidney early (gsgy01) Unknown 694
  Aquafirst Sea Bream SSH selection pathogen head kidney (gsgy07) Unknown 612
Kidney (trunk) CDN09 Adult 2070
Larvae Embryonic and Larvae stages, Stratagene (Catalog #200451) Embryonic and larvae 1327
Larvae (heads) Sparus aurata EST, heads of larvae Larvae 718
Liver Adult liver, Stratagene (Catalog #200451) Adult 584
  CDN01 Adult 2192
  Aquafirst Sea Bream SSH selection confinement liver early (gsgl01) Unknown 510
  Aquafirst Sea Bream SSH selection confinement liver late (gsgl04) Unknown 432
  Aquafirst Sea Bream SSH selection confinement liver early (gsgl02) Unknown 507
  Aquafirst Sea Bream SSH selection confinement liver late (gsgl03) Unknown 414
  Unknown Unknown 438
Muscle CDN13 Adult 2187
Ovary CDN02 Adult 2114
Pituitary Pituitary Library Unknown 123
Skin CDN14 Adult 2142
Spleen Seabream cDN38 Library Unknown 5416
  CDN12 Adult 2193
Testis CDN03 Adult 2146
Ultimobranchial gland CDN16 Adult 11619
 

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