Public Sigenae Contig Browser Salmon-Trout

About the Salmo mykiss contigs database

Assembly

The Salmon / Trout EST contig browser is an INRA project aimed to produce and maintain an automatic annotation of Salmon / Trout EST libraries.

Currently, this is a preliminary portal for the annotation of Trout Agenae ESTs. Please refer to the Agenae Project's Webpage for more details on the Trout Agenae ESTs Project.

Annotation

Contigs were annotated searching sequence homologies against following databases:

• UniProtKB/Swiss-Prot Release 57.4 of 16-Jun-2009
• RefSeq Protein Release 34 of 6-March-2009
• Pfam Release 23.0 of 20-Jul-2008
• Sigenae Trout+Salmon Contigs V4
• RefSeq RNA Release 34 of 6-March-2009
• TIGR Fugu FGI 3.0
• TIGR Medaka OlGI 8.0
• TIGR Salmon AsGI 4.0
• TIGR Trout RtGI 7.0
• TIGR ZebraFish ZGI 17.0
• UniGene FatheadMinnow Build #8
• UniGene Fugu Build #7
• UniGene Human Build #219
• UniGene KilliFish Build #8
• UniGene Medaka Build #26
• UniGene Salmon Build #23
• UniGene Trout Build #30
• UniGene ZebraFish Build #116
• Ensembl Fugu Transcripts FUGU4 54
• Ensembl Human Transcripts NCBI36 54
• Ensembl Medaka Transcripts MEDAKA1 54
• Ensembl Tetraodon Transcripts TETRAODON8 54
• Ensembl ZebraFish Transcripts Zv8 54

Statistics

Assembly:	pss4, June 2009
Number of base pairs:	146,205,126
Number of sequences:	797,490
Total number of contigs:	169,349
Number of singlets:	100,474

Example Data Points

Jump directly to the example entry points:

Contig:	CA055158.p.ss.4
SNP:	snp_CA050095_284