Browse the Ovis aries contigs database
About the Ovis aries contigs database
Assembly
The Sheep EST contig browser is an
INRA project
aimed to produce
and maintain an automatic annotation of Sheep EST libraries.
Currently, this is a preliminary portal for the annotation of Sheep Agenae ESTs.
Please refer to the
Agenae Project's Webpage for more details on the Sheep Agenae ESTs Project.
Annotation
Contigs were annotated searching sequence homologies against following databases:
- UniProtKB/Swiss-Prot Release 56.3 of 14-Oct-2008
- RefSeq Protein Release 31 of 30-August-2008
- Pfam Release 23.0 of 20-Jul-2008
- Sigenae Sheep Contigs V6
- RefSeq RNA Release 31 of 30-August-2008
- TIGR Cattle BtGI 12.0
- TIGR Sheep OaGI 1.0
- UniGene Cattle Build #93
- UniGene Human Build #215
- UniGene Sheep Build #16
- Ensembl Cattle Transcripts Btau_4.0 50
- Ensembl Human Transcripts NCBI36 50
Statistics
| Assembly: | pov6, October 2008 |
| Number of base pairs: | 39,101,930 |
| Number of sequences: | 210,882 |
| Total number of contigs: | 49,540 |
| Number of singlets: | 30,806 |
| Polymorphism: | October 2008 |
| Number of putative SNPs: | 4,074 |
| Number of contigs including SNP: | 1,813 |
Example Data Points
Jump directly to the example entry points:
Based on Ensembl release 40 - Aug 2006
