Public Sigenae Contig Browser Sheep

 

About the Ovis aries contigs database

Cow

Assembly

The Sheep EST contig browser is an INRA project aimed to produce and maintain an automatic annotation of Sheep EST libraries.

Currently, this is a preliminary portal for the annotation of Sheep Agenae ESTs. Please refer to the Agenae Project's Webpage for more details on the Sheep Agenae ESTs Project.

Annotation

Contigs were annotated searching sequence homologies against following databases:

  • UniProtKB/Swiss-Prot Release 2010_04 of 23-Mar-2010
  • RefSeq Protein Index Blast of 05-Apr-2010
  • Pfam Release 24.0 of Jul-2009
  • Sigenae Sheep Contigs V8
  • RefSeq RNA Index Blast of 05-Apr-2010
  • TIGR Cattle BtGI 12.0
  • TIGR Sheep OaGI 1.0
  • UniGene Cattle Build #95
  • UniGene Human Build #223
  • UniGene Sheep Build #19
  • Ensembl Cattle Transcripts Btau_4.0 57
  • Ensembl Human Transcripts GRCh37 57

Statistics

Assembly:pov8, May 2010
Number of base pairs (Contigs):47,170,167
Number of sequences (EST/mRNA):332,684
Total number of contigs:61,905
Number of singlets:37,748
Polymorphism:May 2010
Number of putative SNPs:5,710
Number of contigs including SNP:2,505


Example Data Points

Jump directly to the example entry points:

Contig:CD288412.p.ov.8
SNP:snp_EE779207_37
Oligo:A_70_P000001[oaries_Agilent_15K]

 

© 2012 INRA / WTSI / EBI.

                
Based on Ensembl release 40 - Aug 2006