Public Sigenae Contig Browser Sheep DddView

                
Based on Ensembl release 40 - Aug 2006
 

Sheep Digital Differentiel Display

DDD is a tool for comparing EST profiles in order to identify contigs with significantly different expression levels

Define two library pools by selecting one or more libraries in each «Lib. Pool» column and click on Continue button

Discard singlets

Uncheck below checkboxes to include singlets in analysis of lib. Pool 1, lib. Pool 2 or both.
Organ / Tissue / Cell type Lib. name Dev. stage / Exp. condition Nb ESTs Lib. Pool 1 Lib. Pool 2
Brain OFBB Fetal sheep at 130 days since conception 22030
Brain / spleen Sheep spleen brain pSport1 library Unknown 4052
Callus (healing fracture callus) Adult sheep fracture callus 7d Unknown 14926
  Adult sheep fracture callus pool Unknown 15224
  Adult sheep fracture callus 10d Unknown 17243
Dendritic cells ONDC T colubriformis infected adult Romney sheep 22828
Embryo OD15L Western Range Ewe-cross composite sample day 15 embryo 3516
Embryo (limbs) OFM1 - Muscle tissues from hind limb of d 45 embryo (myoblasts) D 45 embryo (myoblasts) 2979
  OM135 - 135 day foetus Hind limb (mostly muscle) 135 day foetus 2754
  OMU90 - 90 day foetus Combined hind limb tissue of 2 foetuses 90 day foetus 4271
Endometrium POE14_(Day_14_pregnant_ovine_endometrium) Day 14 pregnant 3388
Gall bladder OMGB1 - Gall bladder tissue from sporidesmin dosed adult Romney Adult 6510
  OMGB2 - Gall bladder tissue from sporidesmin undosed adult Romney Adult 2585
Gastric lymph (efferent) KN511 Ovis aries efferent gastric lymph from uninfected sheep Unknown 3107
  KN511 Ovis aries efferent gastric lymph from Teladorsagia infected sheep Unknown 1796
Gastric lymph (node) KN511 Ovis aries gastric lymph node from Teladorsagia infected sheep Unknown 1096
Intestine (small) OSI Unknown 1944
Liver OML2 - Romney normal adult liver Adult 3484
  OML1 - Romney Sporidesmin-dosed livers Adult 2496
  OFLV - foetal liver tissue pooled from d 31/35,d45,d90,d135 embryos D 31/35,d45,d90,d135 embryos 2719
Lymph nodes ONLN - Romney sheep pooled lymph node tissues normalized library Adult - nodes draining sites infected with a variety of pathogen 11168
Lymph nodes (hepatic) OLDA Adult (6 years old) with old facial eczema 335
  OLCA Adult (6 years old) with mild facial eczema 822
Lymph nodes (mesentery) OMNC Adult (6 years old) 4439
Lymph nodes (paratoid gland) OLEA Adult (6 years old) with moderate facial eczema 5113
  OLEB Adult (6 years old) with moderate facial eczema 916
  OLEF Adult (6 years old) with moderate facial eczema 5121
Lymph nodes (sub-mandible) OLBA Adult (6 years old) with moderate facial eczem 4734
  OLFB Adult (6 years old) with moderate facial eczem 991
  OLFA Adult (6 years old) with moderate facial eczem 5117
Lymphoid OFLT - Ovine fetal lymphoid tissue Fetal 4817
Lymphoid (mucosal) OMLT - Ovine mucosal lymphoid tissue Unknown 1964
Mammary gland OVMG - Female Adult pool of ovine mammary gland tissues at various stages in the lactation cycle Adult 2331
Muscle (longissimus dorsi) Black-boned sheep muscle full-length cDNA library Unknown 142
Ovary Ovine foetal ovary tissues (Early folliculogenesis) - F (ocai) 82 days of gestation 2551
  Ovine foetal ovary tissues (Prophase I meiosis) -M (ocaj) 55 days of gestation 2474
  Pre-oestrum adult sheep ovary library Pre-oestrum 144
Ovary (corpus luteum) OD10L - luteal tissue collected from 3 Western Range Ewes Day 10 of the oestrous cycle 2086
Ovary (follicle) OT1F - Romney Female Neonate Ovarian follicles (dissected from ovaries) Type 1 (primordial) follicles 2337
  OT2F - Romney Female Neonate Ovarian follicles (dissected from ovaries) Type 2 (primary) follicles 2489
Ovary (ovarian cortex) OOCX - Romney Female Neonate Composite sample ovarian cortex Neonate 3901
Peyer's patch OAPP - Romney adult Peyers patches Adult 5080
Peyer's patch (terminal ileum) KN511 Ovis aries peyer's patch from terminal ileum of Teladorsagia infected sheep Unknown 2661
Pooled Omix1 Unknown 175
  Omix2 Unknown 266
  Omix4 Unknown 228
  Ooocyte Unknown 262
  Od20pl Unknown 1077
  Od35pl Unknown 989
  Ofetw1u Unknown 322
  Oend13n Unknown 980
  Ocld13n Unknown 855
  Oend13p Unknown 866
  Ocond16 Unknown 1065
  Ocond13 Unknown 602
  Ocond10 Unknown 731
  Omix3 Unknown 209
  Ocld13p Unknown 898
Rectum / large colon KN511 Ovis aries rectum and large colon from E. coli challenged and unchallenged animals Unknown 5177
Skin OCS1 - Louse infected skin (Cockle) Adult 2421
  OCS4 - Orf infected skin Adult 4799
Skin (flank) OASA Adult (6 years old) - female 20594
  OFSA - Fetal sheep at 130 days since conception Fetal 23528
Skin (midflank) Ad adult sheep skin library Adult 701
  Et adult sheep skin library Adult 422
  Fp 73-75d fetal sheep skin library 73-75d pc fetus 1097
  Fs 103-105d fetal sheep skin library 103-105d pc fetus 1075
Stomach (abomasum) KN511 Ovis aries abomasal mucosa (gastric fold) from (Teladorsagia) uninfected sheep Unknown 1421
  KN511 Ovis aries abomasal mucosa (gastric fold) from Teladorsagia infected sheep Unknown 1733
Thyroid OTYA Adult (6 years old) - female 16092
Tonsil OTNA Adult (6 years old) - female 4078
Unknown KN511 Unknown 1033
Wool follicle OSPA - Wiltshire wool follicle in proanagen phase Proanagen phase 2897
  OSAA - Romney Growing wool follicles Unknown 4099
  OSAB - Wiltshire Growing wool follicles Unknown 6292
  OSCA - Wiltshire wool follicle in catagen phase Catagen phase 2453
  OSTA - Wiltshire wool follicles in telogen phase Telogen phase 13091
 

© 2012 INRA / WTSI / EBI.