Browse the Oryctolagus cuniculus contigs database
About the Oryctolagus cuniculus contigs database
Assembly
The Rabbit EST contig browser is an
INRA project
aimed to produce
and maintain an automatic annotation of Rabbit EST libraries.
Currently, this is a preliminary portal for the annotation of Rabbit Agenae ESTs.
Please refer to the
Agenae Project's Webpage for more details on the Rabbit Agenae ESTs Project.
Annotation
Contigs were annotated searching sequence homologies against following databases:
UniProtKB/Swiss-Prot Release 56.3 of 14-Oct-2008
UniProtKB/Swiss-Prot Release 57.1 of 14-Apr-2009
RefSeq Protein Release 34 of 6-March-2009
Pfam Release 23.0 of 20-Jul-2008
Sigenae Rabbit Contigs V8
RefSeq RNA Release 34 of 6-March-2009
TIGR Mouse MGI 16.0
UniGene Human Build #218
UniGene Mouse Build #178
UniGene Rabbit Build #12
Ensembl Human Transcripts NCBI36 53
Ensembl Mouse Transcripts NCBIM37 53
Ensembl Rabbit Transcripts RABBIT 53
Statistics
| Assembly: | poc8, April 2009 |
| Number of base pairs: | 11,430,990 |
| Number of sequences: | 37,688 |
| Total number of contigs: | 16,279 |
| Number of singlets: | 11,817 |
| Polymorphism: | April 2009 |
| Number of putative SNPs: | 549 |
| Number of contigs including SNP: | 172 |
Example Data Points
Jump directly to the example entry points:
Based on Ensembl release 40 - Aug 2006
