Public Sigenae Contig Browser Rabbit

 

About the Oryctolagus cuniculus contigs database

Cow

Assembly

The Rabbit EST contig browser is an INRA project aimed to produce and maintain an automatic annotation of Rabbit EST libraries.

Currently, this is a preliminary portal for the annotation of Rabbit Agenae ESTs. Please refer to the Agenae Project's Webpage for more details on the Rabbit Agenae ESTs Project.

Annotation

Contigs were annotated searching sequence homologies against following databases:

  • UniProtKB/Swiss-Prot Release 56.3 of 14-Oct-2008
  • UniProtKB/Swiss-Prot Release 2010_04 of 23-Mar-2010
  • RefSeq Protein Index Blast of 30-Mar-2010
  • Pfam Release 24.0 of Jul-2009
  • Sigenae Rabbit Contigs V9
  • RefSeq RNA Index Blast of 30-Mar-2010
  • TIGR Mouse MGI 16.0
  • UniGene Human Build #223
  • UniGene Mouse Build #183
  • UniGene Rabbit Build #12
  • Ensembl Human Transcripts GRCh37 57
  • Ensembl Mouse Transcripts NCBIM37 57
  • Ensembl Rabbit Transcripts oryCun2 57
  • Statistics

    Assembly:poc9, May 2010
    Number of base pairs:11,458,677
    Number of sequences:37,719
    Total number of contigs:16,301
    Number of singlets:11,836
    Polymorphism:May 2010
    Number of putative SNPs:503
    Number of contigs including SNP:154


    Example Data Points

    Jump directly to the example entry points:

    Contig:C82952.p.oc.9
    Clone:lcao0018.d.01[Rabbit_2304]
    SNP:snp_DN882700_226

     

    © 2010 INRA / WTSI / EBI.

                    
    Based on Ensembl release 40 - Aug 2006