Public Sigenae Contig Browser Rabbit

 

About the Oryctolagus cuniculus contigs database

Cow

Assembly

The Rabbit EST contig browser is an INRA project aimed to produce and maintain an automatic annotation of Rabbit EST libraries.

Currently, this is a preliminary portal for the annotation of Rabbit Agenae ESTs. Please refer to the Agenae Project's Webpage for more details on the Rabbit Agenae ESTs Project.

Annotation

Contigs were annotated searching sequence homologies against following databases:

  • UniProtKB/Swiss-Prot Release 56.3 of 14-Oct-2008
  • UniProtKB/Swiss-Prot Release 57.1 of 14-Apr-2009
  • RefSeq Protein Release 34 of 6-March-2009
  • Pfam Release 23.0 of 20-Jul-2008
  • Sigenae Rabbit Contigs V8
  • RefSeq RNA Release 34 of 6-March-2009
  • TIGR Mouse MGI 16.0
  • UniGene Human Build #218
  • UniGene Mouse Build #178
  • UniGene Rabbit Build #12
  • Ensembl Human Transcripts NCBI36 53
  • Ensembl Mouse Transcripts NCBIM37 53
  • Ensembl Rabbit Transcripts RABBIT 53
  • Statistics

    Assembly:poc8, April 2009
    Number of base pairs:11,430,990
    Number of sequences:37,688
    Total number of contigs:16,279
    Number of singlets:11,817
    Polymorphism:April 2009
    Number of putative SNPs:549
    Number of contigs including SNP:172


    Example Data Points

    Jump directly to the example entry points:

    Contig:C82952.p.oc.8
    Clone:lcao0018.d.01[Rabbit_2304]
    SNP:snp_DN889453_251

     

    © 2010 INRA / WTSI / EBI.

                    
    Based on Ensembl release 40 - Aug 2006