Browse the Oryctolagus cuniculus contigs database
About the Oryctolagus cuniculus contigs database
Assembly
The Rabbit EST contig browser is an
INRA project
aimed to produce
and maintain an automatic annotation of Rabbit EST libraries.
Currently, this is a preliminary portal for the annotation of Rabbit Agenae ESTs.
Please refer to the
Agenae Project's Webpage for more details on the Rabbit Agenae ESTs Project.
Annotation
Contigs were annotated searching sequence homologies against following databases:
UniProtKB/Swiss-Prot Release 56.3 of 14-Oct-2008
UniProtKB/Swiss-Prot Release 2010_04 of 23-Mar-2010
RefSeq Protein Index Blast of 30-Mar-2010
Pfam Release 24.0 of Jul-2009
Sigenae Rabbit Contigs V9
RefSeq RNA Index Blast of 30-Mar-2010
TIGR Mouse MGI 16.0
UniGene Human Build #223
UniGene Mouse Build #183
UniGene Rabbit Build #12
Ensembl Human Transcripts GRCh37 57
Ensembl Mouse Transcripts NCBIM37 57
Ensembl Rabbit Transcripts oryCun2 57
Statistics
| Assembly: | poc9, May 2010 |
| Number of base pairs: | 11,458,677 |
| Number of sequences: | 37,719 |
| Total number of contigs: | 16,301 |
| Number of singlets: | 11,836 |
| Polymorphism: | May 2010 |
| Number of putative SNPs: | 503 |
| Number of contigs including SNP: | 154 |
Example Data Points
Jump directly to the example entry points:
Based on Ensembl release 40 - Aug 2006
