Browse the Oryctolagus cuniculus contigs database
About the Oryctolagus cuniculus contigs database
Assembly
The Rabbit EST contig browser is an
INRA project
aimed to produce
and maintain an automatic annotation of Rabbit EST libraries.
Currently, this is a preliminary portal for the annotation of Rabbit Agenae ESTs.
Please refer to the
Agenae Project's Webpage for more details on the Rabbit Agenae ESTs Project.
Annotation
Contigs were annotated searching sequence homologies against following databases:
- UniProtKB/Swiss-Prot Release 56.3 of 14-Oct-2008
- UniProtKB/Swiss-Prot Release 2011_04 of 05-Apr-2011
- RefSeq Protein Index Blast of 09-Jan-2011
- Pfam Release 25.0 of Mar-2011
- Sigenae Rabbit Contigs V10
- RefSeq RNA Index Blast of 09-Jan-2011
- TIGR Mouse MGI 16.0
- UniGene Human Build #229
- UniGene Mouse Build #190
- UniGene Rabbit Build #14
- Ensembl Human Transcripts GRCh37 61
- Ensembl Mouse Transcripts NCBIM37 61
- Ensembl Rabbit Transcripts oryCun2 61
Statistics
| Assembly: | poc10, Apr 2011 |
| Number of base pairs (Contigs): | 11,492,265 |
| Number of sequences (EST/mRNA): | 37,694 |
| Total number of contigs: | 16,468 |
| Number of singlets: | 11,953 |
| Polymorphism: | Apr 2011 |
| Number of putative SNPs: | 491 |
| Number of contigs including SNP: | 153 |
Example Data Points
Jump directly to the example entry points:
Based on Ensembl release 40 - Aug 2006
