Browse the Oryctolagus cuniculus contigs database
About the Oryctolagus cuniculus contigs database
Assembly
The Rabbit EST contig browser is an
INRA project
aimed to produce
and maintain an automatic annotation of Rabbit EST libraries.
Currently, this is a preliminary portal for the annotation of Rabbit Agena ESTs
. Please refer to the
Agenae Project's Webpage for more details on the Rabbit Agena ESTs
Project.
Annotation
Contigs were annotated searching sequence homologies against following databases:
- UniProtKB/Swiss-Prot Release 52.0 of 06-Mar-2007
- UniProtKB/TrEMBL Release 35.0 of 06-Mar-2007
- ProDom Release CG67
- Sigenae Rabbit Contigs V5
- UniGene Human Build #200
- UniGene Mouse Build #161
- UniGene Rabbit Build #6
- Ensembl Human Transcripts NCBI36 43
- Ensembl Mouse Transcripts NCBIM36 43
- Ensembl Rabbit Transcripts RABBIT 43
Statistics
| Assembly: | poc5, March 2007 |
| Number of base pairs: | 8,718,938 |
| Number of sequences: | 33,859 |
| Total number of contigs: | 12,519 |
| Number of singlets: | 8,400 |
| Polymorphism: | March 2007 |
| Number of putative SNPs: | 518 |
| Number of contigs including SNP: | 178 |
Example Data Points
Jump directly to the example entry points:
Based on Ensembl release 40 - Aug 2006
