Public Sigenae Contig Browser Trout DddView

                
Based on Ensembl release 40 - Aug 2006
 

Trout Digital Differentiel Display

DDD is a tool for comparing EST profiles in order to identify contigs with significantly different expression levels

Define two library pools by selecting one or more libraries in each «Lib. Pool» column and click on Continue button

Discard singlets

Uncheck below checkboxes to include singlets in analysis of lib. Pool 1, lib. Pool 2 or both.
Organ / Tissue / Cell type Lib. name Dev. stage / Exp. condition Nb ESTs Lib. Pool 1 Lib. Pool 2
Blood cell (red) Omykevn RBC Oncorhynchus mykiss cDNA Unknown 10092
Blood cell (white) Omykevo WBC Oncorhynchus mykiss cDNA Unknown 10350
Brain Brain confinement stress library (rtgb) Unknown 263
  Rainbow trout brain SSH library from warm, cold and hypoxic stress (rtlb) Unknown 2540
  Rainbow trout brain SSH library forward from salinity stress (tcai) Unknown 125
  Rainbow trout brain SSH library reverse from salinity stress (tcaj) Unknown 103
  Rainbow trout female brain (GB5RBPX01) Female 236333
  Rainbow trout male brain (GB5RBPX02) Male 21978
  Rainbow trout male brain (GD3412001) Male 153297
Gill Rainbow trout gill SSH library from bacterial challenge (rtag) Unknown 213
  Rainbow trout gill SSH library forward from salinity stress (tcag) Unknown 202
  Rainbow trout gill SSH library reverse from salinity stress (tcah) Unknown 135
  Rainbow trout gill (F6VG15V01) Freshwater 238925
  Rainbow trout gill (F6VG15V02) Seawater 187304
Gonad Oncorhynchus mykiss reproductive Unknown 6213
Head Oncorhynchus mykiss head Unknown 602
Intestine Rainbow trout intestine SSH library reverse from salinity stress (rtricc) Unknown 132
  Rainbow trout intestine SSH library forward from salinity stress (rtricb) Unknown 136
  Rainbow trout intestine SSH library from bacterial challenge (rtai) Unknown 423
  Rainbow Trout Intestine Lambda Zap II Vector library Unknown 264
Kidney Rainbow trout head kidney SSH library from infection (rtay) Unknown 400
  Oncorhynchus mykiss Kidney infected by infectious hematopoietic necrosis virus Unknown 150
Kidney (anterior) and spleen Leuk Unknown 6676
Kidney (head) Rainbow trout head kidney SSH library reverse from confinement stress (tcak) Unknown 145
  Rainbow trout head kidney SSH library forward from confinement stress (tcal) Unknown 118
Larvae (trunk) Rainbow trout larvae (F0DLFKL01) 38 days larvae 319591
  Rainbow trout larvae (FZ8DYKY01) 38 days larvae 329443
Liver Rainbow trout liver SSH library forward from salinity stress (rtrlbz) Unknown 128
  Rainbow trout liver SSH library reverse from salinity stress (rtrlca) Unknown 109
  Liver confinement stress library (rtgl) Unknown 540
  Rainbow trout liver SSH library from warm, cold and hypoxic stress (rtll) Unknown 3078
  Rainbow trout liver SSH library from bacterial challenge (rtal) Unknown 190
Macrophage 12hr LPS Zap Express Library Unknown 1017
Muscle Rainbow trout muscle SSH library from warm, cold and hypoxic stress (rtlm) Unknown 2343
Muscle (white) Rainbow trout white muscle (F0DLFKL02) Adult 184469
  Rainbow trout white muscle (FZNWKMO01) Adult 370683
Oocyte NCCCWA 10RT#1 Unknown 331
  NCCCWA 10RT#2 Unknown 166
  NCCCWA 10RT#3 Unknown 17598
Ovary AGENAE Rainbow trout normalized ovarian library (tcby) Unknown 4918
  Rainbow trout ovary (GAY7CUQ01) End of vitellogenesis 330504
  Rainbow trout ovary (GAY7CUQ02) Post-ovulation 325331
Pituitary NCCCWA 07RT Unknown 3529
  Pituitary confinement stress library (rtgp) Unknown 164
Pooled NCCCWA 1RT Unknown 46293
  AGENAE Rainbow trout multi-tissues library (tcaa) From embryos to adults 1114
  AGENAE Rainbow trout normalized multi-tissues library (tcad) Unknown 6140
  AGENAE Rainbow trout normalized multi-tissues library (tcac) From embryos to adults 3973
  Tcav From embryos to adults 3365
  Tcay From embryos to adults 26287
  Tcba From embryos to adults 10526
  Tcbk From embryos to adults 26852
  Cadmium exposed rainbow trout subtractive Unknown 336
  NCCCWA 04RT Unknown 2622
  NCCCWA 05RT Unknown 2092
  NCCCWA 03RT Unknown 18038
  NCCCWA 02RT Unknown 17934
  EMB Unknown 3781
  Rainbow trout multi-tissues SSH library from infection (rtax) Unknown 123
  AGENAE Rainbow trout multi-tissues library (tcce) From embryos to adults 7873
  Rainbow trout multi-tissues library (resequencing) (tccn) Unknown 6452
  Characterization of the rainbow trout transcriptome using Sanger and 454-Pyrosequencing approaches (SRX007396) Single immature (1-year-old) male double-haploid fish 1298911
Skin Rainbow trout skin SSH library reverse from confinement stress (tcam) Unknown 155
  Rainbow trout skin SSH library forward from confinement stress (tcan) Unknown 125
Testis AGENAE Rainbow trout normalized testis library (tcab) Juveniles 1023
  AGENAE Rainbow trout normalized testis library (tcbi) Unknown 15090
  NCCCWA 09RT Unknown 5151
  Rainbow trout testis (GBPNQUD01) Stage I 315906
  Rainbow trout testis (GBPNQUD02) Stage III 228691
  Rainbow trout testis (GD3412002) Stage III 455947
Unknown Agenae (tcbj) Unknown 196
Whole body Oncorhynchus mykiss Tzenaicut Lake whole Unknown 2456
  Oncorhynchus mykiss Chilliwack River steelhead whole Unknown 3999
 

© 2012 INRA / WTSI / EBI.