Browse the Oncorhynchus mykiss contigs database
About the Oncorhynchus mykiss contigs database
Assembly
The Trout EST contig browser is an
INRA project
aimed to produce
and maintain an automatic annotation of Trout EST libraries.
Currently, this is a preliminary portal for the annotation of Trout Agena ESTs
. Please refer to the
Agenae Project's Webpage for more details on the Trout Agena ESTs
Project.
Annotation
Contigs were annotated searching sequence homologies against following databases:
- UniProt / SwissProt 50.9 17-Oct-2006
- UniProt / TrEMBL 33.9 17-Oct-2006
- Prodom 31-Oct-2005
- Sigenae Trout Contigs V4
- TIGR Trout RtGI 6.0
- TIGR Fugu FGI 2.0
- TIGR Medaka OlGI 6.0
- TIGR Salmon AsGI 3.0
- TIGR ZebraFish ZGI 17.0
- UniGene Trout Build #20
- UniGene FatheadMinnow Build #2
- UniGene Fugu Build #5
- UniGene KilliFish Build #3
- UniGene Salmon Build #14
- UniGene ZebraFish Build #96
- UniGene Human Build #196
- Ensembl Human Transcripts NCBI 36
- Ensembl Tetraodon Transcripts TETRAODON 7
- Ensembl Fugu Transcripts FUGU 4
- Ensembl Medaka Transcripts MEDAKA 1
- Ensembl ZebraFish Transcripts ZFISH 6
Statistics
| Assembly: | pom4, October 2006 |
| Number of base pairs: | 48,585,409 |
| Number of sequences: | 326,719 |
| Total number of contigs: | 56,392 |
| Number of singlets: | 18,342 |
| Polymorphism: | October 2006 |
| Number of putative SNPs: | 11,135 |
| Number of contigs including SNP: | 4,208 |
Example Data Points
Jump directly to the example entry points:
Based on Ensembl release 40 - Aug 2006
