Browse the Gallus gallus contigs database
About the Gallus gallus contigs database
Assembly
The Chicken EST contig browser is an
INRA project
aimed to produce
and maintain an automatic annotation of Chicken EST libraries.
Currently, this is a preliminary portal for the annotation of Chicken Agenae ESTs.
Please refer to the
Agenae Project's Webpage for more details on the Chicken Agenae ESTs Project.
Annotation
Contigs were annotated searching sequence homologies against following databases:
- UniProtKB/Swiss-Prot Release 57.1 of 14-Apr-2009
- RefSeq Protein Release 34 of 6-March-2009
- Pfam Release 23.0 of 20-Jul-2008
- Sigenae Chicken Contigs V6
- RefSeq RNA Release 34 of 6-March-2009
- TIGR Chicken GgGI 11.0
- UniGene Chicken Build #41
- UniGene Human Build #218
- Ensembl Chicken Transcripts WASHUC2 53
- Ensembl Human Transcripts NCBI36 53
- Chicken Ensembl Genome WASHUC2 53
Statistics
| Assembly: | pgg6, April 2009 |
| Number of base pairs: | 194,232,927 |
| Number of sequences: | 1,535,813 |
| Total number of contigs: | 260,460 |
| Number of singlets: | 129,842 |
| Polymorphism: | April 2009 |
| Number of putative SNPs: | 26,040 |
| Number of contigs including SNP: | 10,418 |
Example Data Points
Jump directly to the example entry points:
Based on Ensembl release 40 - Aug 2006
