Public Sigenae Contig Browser Chicken DddView

                
Based on Ensembl release 40 - Aug 2006
 

Chicken Digital Differentiel Display

DDD is a tool for comparing EST profiles in order to identify contigs with significantly different expression levels

Define two library pools by selecting one or more libraries in each «Lib. Pool» column and click on Continue button

Discard singlets

Uncheck below checkboxes to include singlets in analysis of lib. Pool 1, lib. Pool 2 or both.
Organ / Tissue / Cell type Lib. name Dev. stage / Exp. condition Nb ESTs Lib. Pool 1 Lib. Pool 2
Adipose Chicken fat cDNA library pSPORT1 Unknown 278
  Chicken fat cDNA library pBSII Unknown 231
  Normalized chicken fat cDNA library Unknown 3642
Adipose (abdominal fat) Primary Chicken Abdominal Fat Library (pgf2c) Embryonic (d18,d19); post-hatch (d1,w3,w7,w9,w16,1yr) 364
  Normalized Chicken Abdominal Fat Library (pgf2n) Embryonic (d18,d19); post-hatch (d1,w3,w7,w9,w16,1yr) 1806
  CSEQRBL06 Adult 2672
Bone CSEQRBN09 Chondrocytes isolated from growth plate cartilage Adult 10945
  CSEQRBN10 Chondrocytes isolated from growth plate cartilage Adult 4356
  CSEQRBN20 Chondrocytes isolated from growth plate cartilage Adult 2870
  CSEQRBN22 Chondrocytes isolated from growth plate cartilage Adult 11283
  CSEQRBL03 Chondrocytes isolated from growth plate cartilage Adult 2183
  Chicken Bone Library3 Adult 172
Brain CSEQCHN57 16 day embryo 8376
  CSEQCHN66 16 day embryo 2918
  CSEQCHN67 16 day embryo 2986
  CSEQCHL24 16 day embryo 2437
  RJbrain - Red junglefowl brain library Female 5738
  WLbrain - White Leghorn brain library Female 5234
  Brain cDNA Library 26weeks 5258
  BP Chicken Brain Library Unknown 1719
Brain (cerebellum) CSEQCHN68 Adult 6863
  CSEQCHN69 Adult 4516
  CSEQCHL25 Adult 2810
Brain (cerebrum) CSEQCHN53 Adult 3013
  CSEQCHN72 Adult 8195
  CSEQCHL15 Adult 2797
Brain (not cerebrum or cerebellum) CSEQCHN54 Adult 9609
  CSEQCHN73 Adult 3076
  CSEQCHL16 Adult 2723
Brain/testis WL/RJ Phraped ESTs Unknown 484
Caecal tonsil Eimeiria tenella-infected caecal tonsil Unknown 1959
Embryo CSEQCHN03 20-21 13704
  CSEQCHN04 20-21 9757
  CSEQCHN64 10 2853
  CSEQCHN65 10 6856
  CSEQCHL02 20-21 163
  CSEQCHL01 20-21 2841
  CSEQCHL23 10 2870
  Whole embryo - EM1 6 days old - embryonic stage 304
  Embryo stage 2-4 Embryo stage 2-4 1246
  Chicken Male-subtract-Female 3-dpc. embryonic cDNA library 3 days post-conception embryo 175
  Chicken Female-subtract-Male 3-dpc. embryonic cDNA library 3 days post-conception embryo 248
  Normalized cDNA library Embryonic ten-day-old 104
  Stratagene Chick Embryo Lambda cDNA Library (* 937405) 5 days old 2161
  BP Chicken Embryo Library 5 days old 1314
Embryo (head) CSEQCHN23 22 9322
  CSEQCHN24 22 5743
  CSEQCHN62 36 8102
  CSEQCHN63 36 4486
  CSEQCHL14 22 2850
  CSEQCHL22 36 2791
Embryo (heart) CSEQCHN70 36 3028
  CSEQCHN71 36 2986
  CSEQCHL12 36 2633
Embryo (hensens node) Embryo stage 3+/4 (hensens node) Embryo stage 3+/4 511
Embryo (limbs) CSEQCHN38 36 7343
  CSEQCHN51 22 2973
  CSEQCHN52 22 9915
  CSEQCHN59 36 8930
  CSEQCHL13 22 2860
  CSEQCHL20 36 2744
  Limb Bud - LB1 Pool of 3 1/2 days old, 4 1/2 days old and 6 days old - embryonic stage 2132
Embryo (somites) Somite associated with neural tube - SM1 50 hours old - embryonic stage 2291
Embryo (trunk) CSEQCHN35 36 2555
  CSEQCHN75 36 8158
  CSEQCHL21 36 2736
Eye Chicken eye (hatched). Unnormalized (naw) 15d post-hatched 4411
  Chicken eye (embryo). Unnormalized (nax) 15d embryo 3861
Gonad Embryonic gonad cDNA Library 6.5 day embryo 10294
  Embryonic gonadal PGC cDNA Library 6.5 day embryo 10848
Heart CSEQCHN60 Adult 3053
  CSEQCHN61 Adult 4257
  CSEQCHL26 Adult 1990
Hypothalamus/pituitary gland HC1 21 days old 2153
  HT1 21 days old 2133
Hypothalamus/pituitary gland/pineal gland Normalized Chicken Pituitary/Hypothalamus/Pineal Library (pgp2n) Embryonic (d12,d14,d19); post-hatch (1,3,5,7,9 weeks) 2097
  Normalized chicken pituitary/hypothalamus/pineal cDNA library (pgp2n) Embryonic (d12,d14,d19); post-hatch (1,3,5,7,9 weeks) 1049
  Primary Chicken Pituitary/Hypothalamus/Pineal Library Embryonic (d12,d14,d19); post-hatch (w1,w3,w5,w7,w9) 882
  Normalized Chicken Pituitary/Hypothalamus/Pineal Library Embryonic (d12,d14,d19); post-hatch (w1,w3,w5,w7,w9) 4609
Intestine (small) CSEQCHN56 Adult 12748
  CSEQCHN58 Adult 2945
  CSEQCHL18 Adult 2107
Kidney/adrenal CSEQCHN55 Adult 8903
  CSEQCHN74 Adult 8372
  CSEQCHL17 Adult 1978
Liver CSEQCHN33 Adult 2967
  CSEQCHN34 Adult 8066
  CSEQCHL19 Adult 2098
  Normalized chicken liver cDNA library (pgl1n) Unknown 146
  Gallus gallus DDChick2_Met. library (gcan) Adult (9 weeks) 230
  Chicken liver cDNA library Unknown 374
  DDChick1 Adult (9 weeks) 155
  Chicken liver cDNA library Unknown 670
  Normalized Liver Library Unknown 4065
Lymphocyte Chicken lymphoid library (pat) Con A activated splenic T cells 309
  Chicken MDV infected T cell cDNA library MDV infected splenic T cell 294
  Chicken T cell cDNA library Splenic T cell 344
  Chicken activated T cell cDNA Con A activated splenic T cells 2802
Lymphocyte (bursal lymphocyte) Riken1 2-3 weeks old 35162
  Dkfz426 2-3 weeks old 11430
  DT40subNB Bursal stem cell - avian leukosis virus-induced lymphoma 1678
Lymphocyte (gut) 1GAL - Chicken Intestinal Lymphocyte Adult 14376
Macrophage Chicken Macrophage cDNA library LPS-stimulated HD-11 macrophage cells 907
  LPS-activated macrophage cell line Unknown 1317
  Unstimulated Chicken PBL Macrophage Unknown 1440
  Interferon Stimulated Chicken PBL Macrophage Unknown 3529
  LPS stimulated Chicken PBL Macrophage Unknown 3760
Muscle CSEQRBN11 Adult 7805
  CSEQRBL04 Adult 1460
  Chicken Breast Muscle cDNA Library Adult 105
Muscle (breast) Chicken breast muscle - CB1 1 and 21 days old 2091
  Embryo breast muscle - EB1 Embryos with 9 and 17 days old 1717
  Embryo breast muscle - EB2 Embryos with 9 and 17 days old 1127
Muscles (breast muscle, leg muscle and epiphyseal growth plate) Normalized Chicken Breast Muscle, Leg Muscle, and Epiphyseal Growth Plate cDNA library (pgm1n) Breast,leg:Embryo(d19);post-hatch(1d,1,3,5,7,9,11 weeks);growth plate(1d,7d,14d post-hatch) 327
  Primary Chicken Breast Muscle, Leg Muscle, and Epiphyseal Growth Plate cDNA library (pgm1c) Breast,leg:Embryo(d19);post-hatch(1d,1,3,5,7,9,11 weeks);growth plate(1d,7d,14d post-hatch) 1000
  Normalized Chicken Breast Muscle, Leg Muscle, and Epiphyseal Growth Plate cDNA library (pgm2n) Breast,leg:Embryo(d19);post-hatch(1d,1,3,5,7,9,11 weeks);growth plate(1d,7d,14d post-hatch) 3389
  Normalized chicken muscle cDNA library (pgm2n) Breast,leg:Embryo(d19);post-hatch(1d,1,3,5,7,9,11 weeks);growth plate(1d,7d,14d post-hatch) 1027
Ovary CSEQRBN13 Adult 5571
  CSEQRBN14 Adult 7946
  CSEQRBN19 Adult 8497
  CSEQRBN21 Adult 6212
  CSEQRBL05 Adult 1495
Pancreas CSEQRBN36 Adult 2715
  CSEQRBN37 Adult 3883
  CSEQRBL07 Adult 1213
Pineal gland Chicken pineal cDNA library 10-11 day-old chick 192
Pooled AGENAE Gallus gallus multi-tissues library (gcae) - adrenal gland, caecum, duodenum, jejunum, liver, multi-tissues From embryos to adults 130
  AGENAE Gallus gallus multi-tissues library (gcab) - adipose tissue, granulosa, multi-tissues, oviduct, small folicule, utero-vaginal gland Adult 108
  AGENAE Gallus gallus multi-tissues library (gcac) - brain, multi-tissues, ovary, embryos, hypothalamus, skin, pituitary gland From embryos to adults 126
  AGENAE Gallus gallus multi-tissues library (gcad) - ileon, kidney, multi-tissues, pancreas, testis, hematopoietic progenitor cells From embryos to adults 115
  AGENAE Gallus gallus multi-tissues normalized library (gcag) From embryos to adults 10828
  AGENAE Gallus gallus multi-tissues normalized and once-subtracted cDNA library (gcal) From embryos to adults 10700
Pooled (brain, ultimobranchial gland, parathyroid gland, cecal tonsil, primordial germ cells multiple) BARC_3GAL chicken mixed tissue Unknown 18047
  BARC_4GAL chicken mixed tissue Unknown 3665
Pooled (bursa, spleen, peyers patch) Chicken immune 2 - CSEQRBN29 Unknown 2394
  Chicken immune 3 - CSEQRBN33 Unknown 1600
  Chicken immune 1 - CSEQRBL08 Unknown 975
Pooled (thymus, bursa, spleen, pbl, bone marrow) Normalized chicken lymphoid cDNA library Unknown 1966
  Chicken lymphoid cDNA library (pgn1c) Unknown 2728
  Chicken Lymphoid cDNA library (pgn2c) Unknown 1528
  Normalized chicken lymphoid cDNA library Unknown 812
Retina Embryonic Day 18 (E18) Chick retina library Embryonic Day 18 post-fertilization 198
Spleen Marek's disease virus-infected spleen Unknown 3809
  Spleen cDNA Library 26weeks 3573
Splenocytes PHA-activated splenocytes Unknown 1489
Testis WLtestis - White Leghorn testis library Unknown 4891
  RJtestis - Red junglefowl testis library Unknown 5516
  Testis cDNA Library 26weeks 4301
Testis/ovary/oviduct Primary Chicken Reproductive Tract cDNA Library (pgr1c) Various stages;embryonic, post-hatch, immature and sexually-mature 364
  Normalized Chicken Reproductive Tract cDNA Library (pgr1n) Various stages;embryonic, post-hatch, immature and sexually-mature 1084
  Normalized chicken reproductive tract cDNA library (pgr1n) Various stages;embryonic, post-hatch, immature and sexually-mature 1561
  Normalized chicken reproductive tract (pgr1n) Unknown 4473
  Non-normalized primary chicken reproductive tract (pgr1c) Unknown 855
Thymus Chicken immune 6 - CSEQRBN34 Unknown 984
  Chicken immune 4 - CSEQRBL09 Unknown 2563
  Chicken immune 5 - CSEQRBN30 Unknown 918
Thyroid Chicken thyroid SSH library Unknown 203
Unknown 454 sequencing of Gallus gallus transcript fragment library (SRX000119) Unknown 557764
  454 sequencing of Gallus gallus transcript fragment library (SRX000120) Unknown 355635
Utricle Reiterative Chick Utricle Subtraction Unknown 770
  Primary Chick Utricle Subtraction Unknown 1353
 

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