Public Sigenae Contig Browser Seabass

 

About the Dicentrarchus labrax contigs database

Seabass

Assembly

The Seabass EST contig browser is an AquaFirst project aimed to produce and maintain an automatic annotation of Seabass EST libraries.

Currently, this is a preliminary portal for the annotation of Seabass AquaFirst ESTs. Please refer to the AquaFirst Project's Webpage for more details on the AquaFirst Project.

Annotation

Contigs were annotated searching sequence homologies against following databases:

  • UniProtKB/Swiss-Prot Release 2010_05 of 20-Apr-2010
  • RefSeq Protein Index Blast of 20-Apr-2010
  • Pfam Release 24.0 of Jul-2009
  • Sigenae Seabass Contigs V5
  • RefSeq RNA Index Blast of 20-Apr-2010
  • TIGR Fugu FGI 3.0
  • TIGR Medaka OlGI 8.0
  • TIGR Salmon AsGI 5.0
  • TIGR Trout RtGI 7.0
  • TIGR ZebraFish ZGI 17.0
  • UniGene FatheadMinnow Build #10
  • UniGene Fugu Build #7
  • UniGene Human Build #223
  • UniGene KilliFish Build #8
  • UniGene Medaka Build #27
  • UniGene Salmon Build #25
  • UniGene Trout Build #30
  • UniGene ZebraFish Build #117
  • Ensembl Fugu Transcripts FUGU4 57
  • Ensembl Human Transcripts GRCh37 57
  • Ensembl Medaka Transcripts MEDAKA1 57
  • Ensembl Tetraodon Transcripts TETRAODON8 57
  • Ensembl ZebraFish Transcripts Zv8 57

Statistics

Assembly:pdl5, May 2010
Number of base pairs:16,604,575
Number of sequences:54,271
Total number of contigs:25,029
Number of singlets:17,529
Polymorphism:May 2010
Number of putative SNPs:453
Number of contigs including SNP:261


Example Data Points

Jump directly to the example entry points:

Contig:CV186029.p.dl.5
SNP:snp_FM000467_409

 

© 2010 INRA / WTSI / EBI.

                
Based on Ensembl release 40 - Aug 2006