Public Sigenae Contig Browser Seabass DddView

                
Based on Ensembl release 40 - Aug 2006
 

Seabass Digital Differentiel Display

DDD is a tool for comparing EST profiles in order to identify contigs with significantly different expression levels

Define two library pools by selecting one or more libraries in each «Lib. Pool» column and click on Continue button

Discard singlets

Uncheck below checkboxes to include singlets in analysis of lib. Pool 1, lib. Pool 2 or both.
Organ / Tissue / Cell type Lib. name Dev. stage / Exp. condition Nb ESTs Lib. Pool 1 Lib. Pool 2
Adipose CDN28 Adult 2295
Brain Dicentrarchus labrax brain infected with Nodavirus Unknown 1099
  Confinement brain late (sbub03) Unknown 548
  Confinement brain late (sbub04) Unknown 682
  Pathogen brain early (sbub06) Unknown 697
  Confinement brain early (sbub02) Unknown 658
  Pathogen brain late (sbub07) Unknown 700
  Pathogen brain late (sbub08) Unknown 661
  Confinement brain early (sbub01) Unknown 617
  Pathogen brain early (sbub05) Unknown 709
Brain and pituitary CDN26 Adult 2118
Cartilage and bone CDN25 Adult 2045
Corpuscles of stannius CDN36 Adult 5045
Gills CDN31 Adult 2101
  Dicentrarchus labrax gill infected with Vibrio Anguillarum Unknown 343
  Aquafirst Sea Bass SSH selection pathogen gill (sbrg07) Unknown 302
  Aquafirst Sea Bass SSH selection pathogen gill (sbrg08) Unknown 252
Gills and intestine Subtracted Libraries from sea bass challenge in seawater and freshwater Juvenile 586
Heart and vessels CDN27 Adult 2296
Intestine CDN32 Adult 1989
  Dicentrarchus labrax intestine infected with Vibrio Anguillarum Unknown 326
Kidney Dicentrarchus labrax head kidney infected with Nodavirus Unknown 934
  Dicentrarchus labrax head kidney infected with Vibrio Anguillarum Unknown 911
Kidney (head) Nodavirus infected sea bass SSH library Unknown 206
  CDN29 Adult 1935
  Aquafirst Sea Bass SSH selection confinement head kidney (sbry03) Unknown 260
  Aquafirst Sea Bass SSH selection confinement head kidney (sbry04) Unknown 315
Kidney (trunk) CDN30 Adult 2203
Larvae Dicentrarchus labrax larval cDNA Larval 531
  Mge014 Larvae 1111
Liver D. labrax liver cDNA library Adult 1229
  Liver Sea Bass cDNA library Unknown 190
  CDN22 Adult 2139
  Dicentrarchus labrax liver infected with Nodavirus Unknown 1126
  Dicentrarchus labrax liver infected with Vibrio Anguillarum Unknown 2140
Muscle CDN34 Adult 1776
Ovary CDN23 Adult 2389
Peritoneal exudate Dicentrarchus labrax peritoneal exudate infected with Vibrio Anguillarum Unknown 827
Skin CDN35 Adult 1570
Spleen CDN33 Adult 2277
  Dicentrarchus labrax spleen infected with Nodavirus Unknown 1248
  Dicentrarchus labrax spleen infected with Vibrio Anguillarum Unknown 651
Testis CDN24 Adult 2127
 

© 2012 INRA / WTSI / EBI.