Downloads
Introduction
All data sets generated by the Sigenae project are freely available to download.
There are two types of data dumps for each species:
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FASTA - FASTA sequence databases of Sigenae contigs. Since the FASTA format does not permit sequence annotation, these database files are mainly intended for use with local sequence similarity search algorithms.
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MySQL - Database table dumps in text format, as well as SQL table definition files should be portable to any SQL database.
Download Data
| Crassostrea gigas | FASTA | MySQL |
|---|---|---|
| cgigas_all_contigs | HTTP | |
| cgigas_sigenaecontig__genomic__dm | HTTP | |
| cgigas_sigenaecontig__est_mrna__dm | HTTP | |
| cgigas_sigenaecontig__snp__dm | HTTP | |
| cgigas_sigenaecontig__dna__dm | HTTP | |
| cgigas_sigenaecontig__protein_hit__dm | HTTP | |
| cgigas_sigenaecontig__GO__dm | HTTP | |
| cgigas_sigenaecontig__clones__dm | HTTP | |
| cgigas_sigenaecontig__exp_condition__dm | HTTP | |
| cgigas_sigenaecontig__dna_hit__dm | HTTP | |
| cgigas_sigenaecontig__tissue__dm | HTTP | |
| cgigas_sigenaecontig__dev_stage__dm | HTTP | |
| cgigas_sigenaecontig__repeat__dm | HTTP | |
| cgigas_sigenaecontig__contig__main | HTTP | |
| cgigas_sigenaecontig__keyword__dm | HTTP |
Download Database Dumps
| Crassostrea gigas | MySQL Dumps | |
|---|---|---|
| cgigas_core_40_1 | HTTP | |
| cgigas_variation_40_1 | HTTP | |
| cgigas_ensembl_mart_40_1 | HTTP |