Public Sigenae Contig Browser Oyster DddView

                
Based on Ensembl release 40 - Aug 2006
 

Oyster Digital Differentiel Display

DDD is a tool for comparing EST profiles in order to identify contigs with significantly different expression levels

Define two library pools by selecting one or more libraries in each «Lib. Pool» column and click on Continue button

Discard singlets

Uncheck below checkboxes to include singlets in analysis of lib. Pool 1, lib. Pool 2 or both.
Organ / Tissue / Cell type Lib. name Dev. stage / Exp. condition Nb ESTs Lib. Pool 1 Lib. Pool 2
Digestive gland Oyster exposed to hydrocarbon contamination Adult 239
  CDN19 Crassostrea gigas digestive gland normalized cDNA library Adult 1383
  Crassostrea gigas digestive gland subtracted library, sensitive line (oygd09) Adult 671
  Crassostrea gigas digestive gland subtracted library, resistant line (oygd10) Adult 688
  Subtracted library of inhibited genes from Pacific oyster exposed to lindane by 15 days Adults 215
  Subtracted library of inhibited genes from Pacific oyster exposed to lindane by 30 days Adults 204
  Subtracted library of induced genes from Pacific oyster exposed to lindane by 15 days Adults 307
  Subtracted library of induced genes from Pacific oyster exposed to lindane by 30 days Adults 295
Digestive gland (stressed) CDN20 Crassostrea gigas stressed digestive gland normalized cDNA library Adult exposed to hydrocarbons, pesticides and hypoxia 1443
Digestive gland and gill Pacific oyster exposed to pesticides Adult 132
Digestive gland, gills and mantle Subtracted libraries from oysters exposed to hypoxia Adults 571
Digestive gland, mantle, adductor muscle, gill Subtracted libraries from ripe trisomic versus diploid in June Adult 119
Gills CDN21 Crassostrea gigas gills normalized cDNA library Adult 1383
  Crassostrea gigas gills subtracted library, sensitive line (oypg09) Unknown 265
  Summer mortality gills (fw+rv) (oypg10) Unknown 514
  Summer mortality gills (fw+rv) Crassostrea gigas gills subtracted library, sensitive line (oypg09) Unknown 243
  Pacific oyster Lambda Zap Express gill cDNA library Adult 106
Gills and mantle Subtracted libraries from oysters exposed to temperature challenge Adults 681
Gills, muscle and mantle CCBN Crassostrea gigas mixed adult tissues library 2 normalized Adult 40889
  CCTP Crassostrea gigas mixed adult tissues library 3 normalized Adult 29743
  CCTS Crassostrea gigas mixed adult tissues library 4 normalized Adult 55579
Gonad CDN37 Crassostrea gigas gonad normalized library Adult males and females at four different stages of gonadic development 12155
  Crassostrea gigas gonad subtracted library, sensitive line (oyio09) Adult 212
  Crassostrea gigas gonad subtracted library, resistant line (oyio10) Adult 310
Hemocyte C. gigas Hemocytes Lambda Zap Express Library Adult 1136
  ESTs putatively expressed upon LPS stimulation Unknown 153
  Pacific oyster hemocyte library Unknown 2197
  CDNA-AFLP library from oysters exposed to bacterial challenge (Vibrio tubiashii) Unknown 113
  Crassostrea gigas hemocyte subtracted library, sensitive line (oyih09) Adult 123
  Crassostrea gigas hemocytes normalized cDNA library Bacterial challenged and unchallenged adult oysters 13688
Mantle Subtracted librairies from pacific oysters exposed to pesticides Adult 124
Mantle-edge Crassostrea gigas mantle edge Unknown 399
  Crassostrea gigas mantle-edge subtracted library, sensitive line (oyge09) Adult 669
  Crassostrea gigas mantle-edge subtracted library, resistant line (oyge10) Adult 670
Mantle-gonad CgG2RSMorest Spat (5 month-old) 131
Muscle Crassostrea gigas muscle subtracted library, resistant line (oypm10) Adult 602
  Crassostrea gigas muscle subtracted library, sensitive line (oypm09) Adult 229
Whole animal Pacific oyster 3X3 MPSS QC library Larvae 152
  Pacific oyster 5X5 MPSS QC library Larvae 136
  Pacific oyster 3X5 MPSS QC library Larvae 137
  Pacific oyster 5X3 MPSS QC library Larvae 142
  Crassostrea gigas early developmental stages, D-hinged larvae and spat subtracted libraries Larval 863
  Candidate genes for larval growth heterosis (Crassostrea gigas) 6-day-old veliger 107
  Crassostrea gigas all developmental stages and central nervous system normalized cDNA library Various 12730
  CBSI Crassostrea gigas 2-12 hrs, 24 degrees Crassostrea gigas (H) Larval 5512
  CBSN Crassostrea gigas 2-12 hrs, 24 degrees Crassostrea gigas (L) Larval 4660
  CBSO Crassostrea gigas 15-30 hrs, 24 degrees (H) Larval 990
  CBSP Crassostrea gigas 15-30 hrs, 24 degrees (L) Larval 1821
  Crassostrea gigas all developmental stages and central nervous system normalized cDNA library Various 9569
  454 sequencing of Crassostrea gigas normalized 6 day larvae (SRX032364) 6 day larva 241738
  454 sequencing of Crassostrea gigas normalized 18 day larvae (SRX032365) 18 day larvae 565579
 

© 2012 INRA / WTSI / EBI.