Public Sigenae Contig Browser Cow VennView

                
Based on Ensembl release 40 - Aug 2006
 

Cow EST Libraries

Venn diagrams are diagrams that show all hypothetically possible logical relations between a finite collection of pools

Define up to five library pools by selecting one or more libraries in each «Pool» column and click on Continue button

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Uncheck below checkboxes to include singlets in analysis of different pools.

Organ / Tissue / Cell type Lib. name Dev. stage / Exp. condition Nb ESTs Pool 1 Pool 2 Pool 3 Pool 4 Pool 5
Adipocyte cell line Bos taurus adipocyte cell line Unknown 4395
Adipose CSEQFXL19 adipose Unknown 173
  Bos taurus CF-24-HW cDNA library 24 months old 1744
  Bos taurus CF-24-HW fat cDNA library 24 months old 7081
  Bovine Mixed Adipose cDNA library Young adult 900
Adipose (intermuscular fat) HW cDNA library intermuscular fat 24 months old 12101
Adipose (subcutaneous) Bos taurus fat cDNA library Young Adult 1224
  Cattle subcutaneous adipose tissue cDNA library Unknown 2975
Adrenal gland CSEQFXL14 adrenal Unknown 149
  BAGA - Bovine adrenal gland cDNA library Unknown 3317
Basal ganglia GC_BGC-27 - Hereford basal ganglia library 8.5 months old female calf 16297
Blood (leukocytes) Normalized Bovine Total Leukocyte cDNA Library (BOTL) Mid-lactation 932
Blood (lymphocytes) Bovine PBL subtracted library Unknown 775
Blood (mononuclear cells) BPMA - Bovine peripheral blood mononuclear cells cDNA library Calf 8031
Bone Bt_FGP epiphyseal growth plate fetal library Fetal 241
Bone marrow KN-252-bone-marrow, Bos taurus Unknown 3958
  GC_BGC-20 - Hereford fetal medulla library 6 months - male 9825
Brain Normal cattle brain Adult brain 25385
  FFB - Friesian fetal brain cDNA library 30-32 week fetus 25259
  Bos taurus brain fetus Fetus 7312
Brain (anterior brain) BABA - Bovine anterior brain stem cDNA library Unknown 5703
Brain (cerebellum) GC_BGC-22 - Hereford fetal cerebellum library 6 months - male 18650
  BCEB - Bovine brain cerebellum cDNA library 'B' Calf 5925
  BCEA - Bovine brain cerebellum cDNA library 'A' Calf 1368
Brain (cerebral cortex) GC_BGC-18 - Hereford fetal cerebral cortex library 6 months - male 13988
  GC_BGC-28 - Hereford cerebral cortex library 8.5 months old calf - female 9208
Brain (cortex) BCXB - Bovine brain cortex cDNA library 'B' Calf 5569
Brain (pons) GC_BGC-19 - Hereford fetal pons library 6 months - male 16424
Brain (posterior) BPBA - Bovine posterior brain stem cDNA library Calf 6548
Cartilage Bos taurus cartilage fetus Fetus 7911
Colon (ascending) GC_BGC-17 - Hereford ascending colon library 6 months old fetus - male 19357
Colon/ileum KN510 Bos taurus colon/ileum tissue from E. coli challenged/treated/uninfected animals Unknown 2592
Embryo Day 14 bovine embryos (bcai) Early elongating +/- 15 mm 964
  NVH bovine early embryo cDNA library KECB Compact morula - expanded blastocyst - 20 flushed preimplantation 8971
  Bos taurus day-17 embryo cDNA subtracted library Day-17 embryos 308
  BEMA - Bovine embryonic cDNA library Unknown 3150
  Bcan - library enriched in transcripts specifically expressed during genome activation in bovine embryos Cleavage 5921
  MARC 4BOV - Pooled tissue from day 20 and day 40 bovine embryos library Day 20 and day 40 31295
  Cloned bovine fetus cDNA Fetus 5358
  Bovine embryo cDNA Unknown 109
Embryo and extra-embryonic Normalized and Subtracted bovine embryonic and extraembryonic tissue Embryo (day 36 and day 64) and extra-embryonic tissue (day 14 to 25) 114
  BE03 Normalized and Subtracted bovine embryonic and extraembryonic tissue Embryo (day 36 and day 64) and extra-embryonic tissue (day 14 to 25) 3479
  BE04 Normalized and Subtracted bovine embryonic and extraembryonic tissue Embryo (day 36 and day 64) and extra-embryonic tissue (day 14 to 25) Normalized and twice subtracted library 6691
  Normalized and Subtracted bovine embryonic and extraembryonic tissues (bcaz/BE03) Embryo (day 36 and day 64), extra-embryonic tissue (day 14 to 25) 7691
Endometrium Bovine SSH library; endometrium; estrus; OE3 Estrus (day 0 of the estrous cycle) 107
  Bovine SSH library; endometrium; diestrus; DI3 Diestrus (day 12 of the estrous cycle) 104
  Bovine SSH library; endometrium; day 18 of pregnancy; 18c Day 18 of pregnancy 243
  Bos taurus day-17 endometrial cDNA subtracted library Day-17 endometrial tissue 296
  Bovine SSH library; endometrium; day 18 of pregnancy; 18KB Day 18 of pregnancy 311
  Bovine SSH library; endometrium; day 18 of estrous cycle; 18KO Day 18 of estrous cycle 229
Endometrium (caruncular and inter-caruncular regions) Normalized and Subtracted bovine endometrium tissues (bcbp) Day 20, day 32 and day 64 pregnant cows, cows displaying embryo mortality, day 20 cyclic cows 4752
Heart (ventrical) GC_BGC-12 - Hereford heart ventrical library 8.5 months - female 13713
Hippocampus GC_BGC-25 - Hereford hippocampus library 8.5 months old calf - female 17022
Hypothalamus CSEQFXL18 hypothalamus Unknown 172
  CSEQFXN27 hypothalamus Unknown 168
  CSEQFXN32 hypothalamus Unknown 186
  CSEQFXN08 hypothalamus Unknown 172
  GC_BGC-11 - Hereford hypothalamus library 8.5 months - female 42490
  BHTA - Bovine hypothalamus cDNA library Unknown 2843
Intestine Cattle pUC18 Library Lactation 195
Intestine (duodenum) Bos taurus Duodenum #1 library Young adult 2387
Intestine (epithelial, muscle) BARC 8BOV - Normalized cow cDNA intestinal library Lactating, Neonatal 19110
Intestine (ileum) Bos taurus Ileum #1 library Young adult 2603
  GC_BGC-02 - Crossbred x Angus ileum library Calf, 6 months old 11938
Intestine (jejunum) Bos taurus Jejunum #1 library Young adult 2634
Intestine (jejunum/ileum) BARC 10BOV - Proximal jejunums and distal ileums library Jejunums of 18 and 21 wk old steers - ileums of 14 day old calves - jejunum exposed to C. oncophora for 3 and 6 weeks - ileum exposed to C. parvum for 7 days 21510
Intestine (small) CSEQFXL04 small intestine Unknown 176
  CSEQFXN47 small intestine Unknown 175
  CSEQFXN48 small intestine Unknown 170
  BSIA - Bovine Small intestinal mucosal cDNA library Unknown 2294
Kidney CSEQFXL03 kidney Unknown 138
  CSEQFXN35 kidney Unknown 165
  CSEQFXN36 kidney Unknown 173
  GC_BGC-34 - Hereford kidney library 8.5 months - female 27826
  Bos taurus kidney fetus Fetus 8547
Lens Cow lens. Unnormalized (nbm) Adult 3746
Liver CSEQFXL02 liver Unknown 158
  CSEQFXN34 liver Unknown 175
  CSEQFXN33 liver Unknown 178
  ORCS bovine liver cDNA Adult 6698
  KN-252-liver, Bos taurus Unknown 4428
  GC_BGC-14 - Hereford fetal liver library 6 months - female 18263
  GC_BGC-04 - Crossbred x Angus liver library Calf, 6 months old - female 37258
  Bos taurus CF-24-HW liver cDNA library 24 months old 9204
  BLIB - Bovine liver cDNA library 'B' Calf 5176
  HW cDNA library liver 24 months old 12535
  Bos taurus liver fetus Fetus 323
Lung GC_BGC-23 - Hereford fetal lung library 6 months - male 20850
  Bos taurus lung fetus Fetus 4041
Lymph node KN-252-lymph, Bos taurus Unknown 3363
  BMNA - Bovine mesenteric lymph node cDNA library Unknown 3157
  BPNA - Bovine prescapular lymph node cDNA library Unknown 2904
  KN510 Bos taurus lymphocytes/lymph nodes Unknown 2459
Lymphoreticular KN510 M. bovis infected Bos taurus DC/Mphage/Mo Unknown 3541
  KN510 Bos taurus uninfected DC/Mphage/Mo Unknown 3403
Macrophage Bovine BoMAC subtracted library Unknown 228
Mammary BARC-EMBRAPA 302BOV Prepubertal 161
  GC_BGC-03 - Hereford mammary gland library 4 years 1126
  Bovine MAC-T cells subtracted library Unknown 610
  Bovine MEC subtracted library Unknown 298
  BMGA - Bovine lactating mammary gland cDNA library Adult, lactating 2568
  BPMT - Bovine partial mammary subtracted cDNA library Unknown 654
  BMVB - Bovine mammary tissue - virgin cDNA library 'B' Adult 3668
  BMGS - Bovine lactating mammary gland cDNA library Adult, lactating 678
  BMLB - Bovine mammary (late involution) cDNA library B Adult 2812
  BMUA - Combined BMAA and BMCA (both mastitic libraries ) cDNA library Mastitic mammary 4264
  BMPA - Bovine 85 days pre-partum mammary tissue cDNA library 85 days pre-partum 10433
  BPMS - Bovine partial mammary subtracted cDNA library Unknown 815
  FLM - Pregnant lactating Friesian cow mammary gland library Lactating 31976
  FNM - Non-lactating, non-pregnant Friesian cow mammary glands library Adult, non-lactating, non-pregnant 38415
  Bovine Mammary Gland Subtract Full-Length cDNA Library Unknown 175
  BARC 5BOV - Pooled mRNA isolated from mammary tissues at eight physiological, developmental, and disease states bovine library Mixed developmental stages 26675
Mammary (teat canal epithelium) BUTA - Bovine mammary (teat) cDNA library Unknown 4425
Muscle GC_BGC-30 - Hereford muscle library 6 months old fetus - male 30401
  BFMA - Bovine Foetal Muscle cDNA library Fetal 4731
  BAMA - Bovine Muscle cDNA library Unknown 4325
Muscle (cardiac) BCMA - Bovine cardiac muscle cDNA library A Calf 5112
Muscle (longissimus dorsi) Bos taurus LM-24-HW cDNA library 24 months old 1058
  Bos taurus muscle cDNA library Young Adult 1798
  HW cDNA library longissimus dorsi 24 months old 10790
Muscle (rib eye) CSEQFXN16 muscle, rib eye Unknown 173
  CSEQFXL25 muscle, rib eye Unknown 186
  CSEQFXN17 muscle, rib eye Unknown 168
Muscle (skeletal) Bos taurus CF-24-HW loin cDNA library 24 months old 7865
  BSMA - Bovine skeletal muscle cDNA library Calf 5093
  MARC BSM - Holstein cow skeletal muscle library Two year old 971
  Monsanto bovine skeletal muscle cDNA library BOVMS1 Adult 1295
Muscles (heart, longissimus thoracis, semitendinosus, masseter, cutaneus trunci) Bovine multi-stage muscles library (bcaj) From embryos to adults 547
  Bovine multi-stage muscles library (bcas) From embryos to adults 378
Muscles (masseter, longissmusclorsi, biceps femoris, semimembrances) Bovine Mixed Skeletal Muscle cDNA Library Young adult 869
Ovary CSEQFXN18 ovary Unknown 186
  CSEQFXL21 ovary Unknown 174
  CSEQFXN19 ovary Unknown 171
  KN261 - Bovine ovary normalised library Adult 9695
  BOVA - Bovine ovary cDNA library A Calf 1250
  BINA - Bovine ipsilateral non-ovulated ovary cDNA library Unknown 1404
  BOVB - Bovine ovary cDNA library Calf 5122
  BCOA - Bovine contralateral - ovulated ovary cDNA library Adult 1731
  BIOA - Bovine ipsilateral ovulated ovary cDNA library Adult 698
  BCNA - Bovine contralateral, non-ovulated ovary cDNA library Adult 4025
  GC_BGC-33 - Hereford ovary library 8.5 months 22760
  Lewin Cattle Ovary Adult 427
  Bos taurus ovary fetus Fetus 3233
Ovary (corpus luteum) Bovine Lambda Zap Express corpus luteum cDNA library Day 6, 8 and 14 of the oestrus cycle 367
Ovary (oocyte) Bovine oocyte cDNA Library Germinal vesicle and metaphase II 230
Pancreas GC_BGC-24 - Hereford fetal pancreas library 6 months old fetus - male 25780
Paratoid salivary BPSA - Bovine Paratoid salivary cDNA library Unknown 1308
Peyer's patch GC_BGC-01 - Crossbred x Angus Peyer's Patch library Calf, 6 months old - female 1308
  BPPA - Bovine peyers patch cDNA library Unknown 3175
Pineal MARC 11BOV - Pineal gland bovine library Unknown 15219
Pituitary CSEQFL17 pituitary Unknown 165
  CSEQFXN31 pituitary Unknown 184
  CSEQFXN30 pituitary Unknown 182
Pituitary (anterior) BAPA - Bovine anterior pituitary cDNA library Unknown 1597
Placenta Cloned bovine placenta cDNA 60 embryonic day 1126
  NG01 rearrayed Soares normalized bovine placenta Near-term 501
  BPLA - Bovine placental cDNA library Adult 861
  GC_BGC-32 - Hereford placenta library 6 months old fetus 19187
  Bplad35 Day 35 Placenta 992
  Soares normalized bovine placenta Unknown 13089
  Bovine placenta cDNA Unknown 936
Pooled MARC 6BOV - Multiple tissues including liver, lung, hypothalamus, pituitary, and placenta/endometrium library Unknown 64717
  MARC 7BOV - Multiple tissues including ovary, hindbrain, uterus, and day-30 whole embryos library Unknown 79292
  Bos taurus skin cDNA library Adult 7350
  Bemiv Mixed developmental stages 8942
  Bend Mixed developmental stages 8946
  Bov Mixed developmental stages 2512
  Bcl Mixed developmental stages 9070
  Bconb In vivo derived blastocysts Day 8 6482
  Bmix Conceptus-Corpus Luteum(mixed) 2213
  Bof Ovarian Follicle 5575
  MARC 1BOV - Pooled tissue from lymph node, ovary, fat, hypothalamus, and pituitary bovine library Unknown 34926
  MARC 2BOV - Pooled tissue from testis, thymus, semitendonosus muscle, longissimus muscle, pancreas, adrenal, and endometrium bovine library Unknown 37610
  MARC 3BOV - Pooled tissue from marrow, alveolar macrophage, ovary, fetal semitendonosus muscle, and fetal longissimus muscle.bovine library Unknown 41989
Rectum KN510 Bos taurus rectum from E. coli challenged/treated animals Unknown 2244
  KN510 Bos taurus rectum from E. coli unchallenged animals Unknown 2873
Seminal vesicle BSVA - Bovine Seminal vesicle cDNA library Unknown 1429
Skin GC_BGC-29 - Hereford skin library 6 months old fetus - female 31418
Spinal column GC_BGC-21 - Hereford fetal spinal column library 6 months - male 8106
Spleen Subtracted Lewin Cattle Spleen Adult 5162
  KN-252-spleen, Bos taurus Unknown 3610
  BSPB - Bovine spleen stem cDNA library Calf 5725
  Bovine Spleen cDNA library Unknown 180
  Lewin Cattle Spleen Adult 753
Stomach (abomasum) CSEQFXL23 stomach-abomasum Unknown 183
  CSEQFXL06 stomach-abomasum Unknown 119
  CSEQFXL07 stomach-abomasum Unknown 156
  Bos taurus Abomasum #1 library Young adult 1382
  BARC 9BOV - Fundic and pyloric abomasums library 18 and 21 week old steers exposed to Ostertagia ostertagi 22220
  Bovine Abomasum cDNA Library Young adult 1010
Stomach (omasum) Bos taurus Omasum #1 library Young adult 2263
  CSEQFXL22 stomach-omasum Unknown 184
Stomach (reticulum) Bos taurus Reticulum #1 library Young adult 1834
  CSEQFXL06 stomach-reticulum Unknown 176
  CSEQFXL08 stomach-reticulum Unknown 168
Stomach (rumen) Bos taurus Rumen #1 library Young adult 2346
  CSEQFXL05 stomach-rumen Unknown 307
  GC_BGC-35 - Hereford rumen library 8.5 months - female 28478
  Bos taurus rumen fetus Fetus 548
Stomach (rumen, omasum, abomasum, reticulum) CSEQFXN40 pool of stomach libraries Unknown 174
  CSEQFXN45 pool of stomach libraries Unknown 174
Testes CSEQFXL41 testes Unknown 183
  CSEQFXN41 testes Unknown 180
  CSEQFXN20 testes Unknown 185
  CSEQFXN21 testes Unknown 172
  CSEQFXN42 testes Unknown 170
  GC_BGC-05 - Hereford testis library 7 years 10930
  BTSA - Bovine Testes cDNA library Unknown 3264
Thalamus GC_BGC-26 - Hereford thalamus library 8.5 months old calf - female 8966
Thymus CSEQFL16 thymus Unknown 156
  GC_BGC-13 - Hereford thymus library 8.5 months - female 27537
  BTMA - Bovine Thymus cDNA library Unknown 3046
Thyroid BTYA - Bovine hypothalamus cDNA library Unknown 2630
Thyroid and parathyroid CSEQFN23 thyroid and parathyroid Unknown 179
  CSEQFN22 thyroid and parathyroid Unknown 175
  CSEQFXL15 thyroid and parathyroid Unknown 160
  CSEQFN43 thyroid and parathyroid Unknown 178
  CSEQFN46 thyroid and parathyroid Unknown 175
Tonsil BTNA - Bovine tonsil cDNA library Unknown 4612
Unknown BEMN Unknown 37798
  KN510 Unknown 1012
Uterus KN224 - Bovine uterus normalised library Adult female 9852
  GC_BGC-16 - Hereford uterus library 8.5 months old 19110
Uterus and placenta ORCS bovine utero-placenta cDNA Adult 6249

 

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