Browse the Bos taurus contigs database
About the Bos taurus contigs database
Assembly
The Cattle EST contig browser is an
INRA project
aimed to produce
and maintain an automatic annotation of Cattle EST libraries.
Currently, this is a preliminary portal for the annotation of Cattle Agenae ESTs.
Please refer to the
Agenae Project's Webpage for more details on the Cattle Agenae ESTs Project.
Annotation
Contigs were annotated searching sequence homologies against following databases:
- UniProtKB/Swiss-Prot Release 57.0 of 24-Mar-2009
- RefSeq Protein Release 34 of 6-March-2009
- Pfam Release 23.0 of 20-Jul-2008
- Sigenae Cattle Contigs V8
- RefSeq RNA Release 34 of 6-March-2009
- TIGR Cattle BtGI 12.0
- UniGene Cattle Build #93
- UniGene Human Build #218
- Ensembl Cattle Transcripts Btau_4.0 53
- Ensembl Human Transcripts NCBI36 53
- Cattle Ensembl Genome Btau_4.0 53
Statistics
| Assembly: | pbt8, April 2009 |
| Number of base pairs: | 170,379,948 |
| Number of sequences: | 1,530,109 |
| Total number of contigs: | 213,548 |
| Number of singlets: | 145,557 |
| Polymorphism: | April 2009 |
| Number of putative SNPs: | 24,978 |
| Number of contigs including SNP: | 9,671 |
Example Data Points
Jump directly to the example entry points:
Based on Ensembl release 40 - Aug 2006
